Factsheet for VIT_13s0067g01420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0125g00350.t01
VIT_01s0011g02180.t01
VIT_03s0017g00150.t01
VIT_04s0008g05010.t01
VIT_05s0020g00100.t01
VIT_05s0124g00240.t01
VIT_06s0061g00810.t01
VIT_07s0005g03000.t01
VIT_08s0007g06730.t01
VIT_08s0056g00210.t01
VIT_12s0057g00240.t01
VIT_15s0045g00310.t01
VIT_15s0046g01350.t01
VIT_16s0050g00030.t01
VIT_17s0000g01720.t01
VIT_17s0000g10250.t01
VIT_18s0001g13740.t01
VIT_18s0089g00210.t01
VIT_18s0122g00550.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11520.1	VIT_05s0124g00240.t01	AT1G05805.1	20706207
AT3G11520.1	VIT_17s0000g01720.t01	AT1G56110.1	20706207
AT3G11520.1	VIT_15s0046g01350.t01	AT3G61650.1	20706207
AT3G11520.1	VIT_16s0050g00030.t01	AT4G25550.1	20706207
AT3G11520.1	VIT_18s0001g13740.t01	AT4G38900.1	20706207
AT3G11520.1	VIT_08s0007g06730.t01	AT5G06680.1	20706207
AT4G37490.1	VIT_18s0122g00550.t01	AT1G20930.1	20706207
AT4G37490.1	VIT_18s0122g00550.t01	AT1G76540.1	20706207
AT4G37490.1	VIT_15s0045g00310.t01	AT3G48750.1	12065421
AT4G37490.1	VIT_08s0056g00210.t01	AT3G54180.1	12065421
AT5G06150.1	VIT_00s0125g00350.t01	AT1G04810.1	20706207
AT5G06150.1	VIT_18s0122g00550.t01	AT1G20930.1	20706207
AT5G06150.1	VIT_01s0011g02180.t01	AT1G48920.1	20706207
AT5G06150.1	VIT_05s0020g00100.t01	AT1G48920.1	20706207
AT5G06150.1	VIT_18s0089g00210.t01	AT1G71380.1	20706207
AT5G06150.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT5G06150.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT5G06150.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT5G06150.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT5G06150.1	VIT_08s0056g00210.t01	AT3G54180.1	20706207
AT5G06150.1	VIT_17s0000g10250.t01	AT4G24820.1	20706207
AT5G06150.1	VIT_12s0057g00240.t01	AT4G28230.1	20706207
AT5G06150.1	VIT_04s0008g05010.t01	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g00930.t01	Wine grape	nucleus	78.14	79.69
PGSC0003DMT400018480	Potato	nucleus	60.82	66.12
Solyc10g080950.1.1	Tomato	nucleus	66.02	66.02
Solyc10g078330.1.1	Tomato	nucleus	60.17	65.72
PGSC0003DMT400072211	Potato	nucleus	65.15	64.87
KRG95055	Soybean	nucleus	63.64	64.62
KRH66713	Soybean	nucleus	62.34	63.44
KRH66720	Soybean	endoplasmic reticulum, vacuole	26.41	61.31
KRH66715	Soybean	nucleus	50.65	59.69
KRH66718	Soybean	plastid	47.4	58.71
VIT_06s0009g02090.t01	Wine grape	nucleus	52.81	58.37
GSMUA_Achr4P10090_001	Banana	nucleus	53.68	58.35
GSMUA_Achr10P...	Banana	nucleus	56.06	57.17
GSMUA_Achr7P21380_001	Banana	nucleus	56.49	57.11
TraesCSU01G217300.1	Wheat	cytosol	26.62	56.94
CDY69551	Canola	nucleus	43.51	56.62
CDY62475	Canola	nucleus	42.86	56.41
Bra028741.1-P	Field mustard	nucleus	50.65	56.39
Bra002046.1-P	Field mustard	nucleus	47.84	56.23
Zm00001d019469_P001	Maize	extracellular	17.32	55.94
GSMUA_Achr8P23970_001	Banana	nucleus	52.38	55.63
KRG95056	Soybean	cytosol	46.54	55.56
AT3G11520.1	Thale cress	nucleus	49.78	55.56
HORVU0Hr1G001680.1	Barley	nucleus	38.31	55.31
Bra005880.1-P	Field mustard	nucleus, plastid	48.7	54.35
AT4G37490.1	Thale cress	nucleus	49.78	53.74
AT5G06150.1	Thale cress	nucleus	51.73	53.71
GSMUA_AchrUn_...	Banana	nucleus	34.2	53.02
GSMUA_Achr3P24980_001	Banana	nucleus	46.1	52.99
CDX69311	Canola	nucleus	48.05	52.98
HORVU1Hr1G068080.1	Barley	plastid	39.18	52.92
CDY11354	Canola	plastid	49.57	52.89
CDX80988	Canola	plastid	48.7	52.57
Bra011769.1-P	Field mustard	nucleus	48.27	52.1
CDX75659	Canola	nucleus	48.27	52.1
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	46.54	51.19
Zm00001d012560_P002	Maize	nucleus, plastid	49.35	50.78
EES03772	Sorghum	nucleus, plastid	49.35	50.78
TraesCS1D01G309300.1	Wheat	nucleus, plastid	47.62	50.46
HORVU3Hr1G078880.2	Barley	nucleus	49.35	50.33
TraesCS1A01G309800.1	Wheat	nucleus	47.4	50.23
TraesCS3D01G326600.1	Wheat	nucleus	49.35	50.11
TraesCS3A01G333000.2	Wheat	nucleus	49.57	49.78
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	47.19	49.77
TraesCS1B01G320900.1	Wheat	nucleus, plastid	46.97	49.77
TraesCS3B01G363200.3	Wheat	nucleus	49.13	49.24
TraesCS1D01G309400.1	Wheat	nucleus	46.54	49.2
TraesCS1B01G321000.1	Wheat	nucleus	46.1	48.85
KXG24389	Sorghum	nucleus	26.62	48.81
HORVU0Hr1G026010.1	Barley	nucleus, plastid	46.1	48.08
HORVU1Hr1G068160.2	Barley	nucleus, plastid	46.1	48.08
Os01t0281200-01	Rice	nucleus	42.86	46.81
Zm00001d043164_P002	Maize	nucleus	48.7	46.49
TraesCS3D01G195200.1	Wheat	plastid	40.91	45.76
TraesCS3A01G192100.1	Wheat	nucleus, plastid	40.48	45.17
Zm00001d010656_P001	Maize	nucleus	43.51	45.07
EES18429	Sorghum	mitochondrion	43.72	43.91
Os05t0493500-00	Rice	nucleus	46.1	43.74
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	29.87	41.95
EES02793	Sorghum	nucleus	40.91	40.82
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	34.42	40.15
Zm00001d008221_P001	Maize	nucleus	41.56	40.08
HORVU3Hr1G040990.2	Barley	nucleus, plastid	40.04	37.6
VIT_18s0001g14170.t01	Wine grape	nucleus	34.63	36.28
CDY14091	Canola	plastid	50.87	35.82
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	32.03	34.91
AT1G34460.5	Thale cress	cytosol	37.45	34.74
Zm00001d020996_P001	Maize	nucleus	40.48	34.38
Zm00001d020033_P001	Maize	nucleus	40.26	34.19
CDY04980	Canola	nucleus	50.65	32.59
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	24.46	30.96
VIT_03s0091g00280.t01	Wine grape	nucleus	22.29	30.21
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	23.16	28.92
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	23.16	26.68
VIT_09s0002g05240.t01	Wine grape	nucleus	25.54	24.08
VIT_18s0001g02060.t01	Wine grape	plastid	25.76	24.04
VIT_19s0085g00690.t01	Wine grape	nucleus	31.17	23.84

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100253549	wikigene:100253549	MapMan:13.1.1.1.2	EMBL:AM424613	ProteinID:CAN73346
ProteinID:CAN73346.1	ProteinID:CBI25451	ProteinID:CBI25451.3	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:D7T4L9	EMBL:FN595514	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100253549	wikigene:LOC100253549	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF267	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI00019846A2	ArrayExpress:VIT_13s0067g01420	EnsemblPlantsGene:VIT_13s0067g01420	EnsemblPlants:VIT_13s0067g01420.t01	unigene:Vvi.14880
RefSeq:XP_002273378	RefSeq:XP_002273378.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:-:806695..809495

Molecular Weight (calculated)

51291.9 Da

IEP (calculated)

9.129

GRAVY (calculated)

-0.284

Length

462 amino acids

Sequence
(BLAST)

001: MASRAVVPRD HQQPRGEAVA GNGKQKKIVA AERRNRQALG DIGNLVTIGV DGKPQPQISR PITRGFCAQL LAKAKEAENN KKAVRANVDG AQLRANVDGA
101: LLVTNGAAAG KGPEAEKAAQ KKVAVKTKPE AVIELSSDTE EVKKEKPINT KKTGEGSSRK KVQTMTSILT SRSKAACGLT DKKPKEQIVD IDAADANNEL
201: AVVEYVEDIY KFYKLIESES HIHDYMDSQP EMNEKMRSIL VDWLIEVHHK FELMPETLYL TINIIDRFLS VKTVPRRELQ LVGISAMLIA SKYEEIWAPE
301: VNDFVCISDR AYSDQQIRNM EKAILGRLEW TLTVPTPYVF LVRFIKASIP DQEMEHMVYF YAELGLANYA TMMYCSSMFA ASSVYAARCA LNKSPVWDET
401: LKAYTGFSEA QLLDCAKLLA SFHSMAAENK LIKAVYRKYS QPHRSGVAFR PPAKVLLAAA AS

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.