Factsheet for VIT_15s0046g01350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G61650.1	Thale cress	cytosol	96.62	96.62
AT5G05620.1	Thale cress	cytosol	96.2	96.2
Bra007622.1-P	Field mustard	cytosol	95.36	95.56
CDX71723	Canola	cytosol	95.36	95.56
CDY11370	Canola	cytosol	95.36	95.56
KRG97131	Soybean	cytosol	95.15	95.15
KRH68880	Soybean	endoplasmic reticulum	95.15	95.15
PGSC0003DMT400039263	Potato	cytosol	94.51	94.51
Solyc03g111380.2.1	Tomato	cytosol	94.3	94.3
EES19069	Sorghum	cytosol	93.04	94.03
Os05t0156600-01	Rice	cytosol	93.04	94.03
HORVU1Hr1G023030.2	Barley	cytosol	91.35	92.32
TraesCS1A01G099400.1	Wheat	cytosol	91.35	92.32
TraesCS1B01G124800.1	Wheat	cytosol	91.35	92.32
TraesCS1D01G107300.1	Wheat	cytosol	91.35	92.32
GSMUA_Achr1P14750_001	Banana	cytosol	92.19	91.42
Zm00001d035567_P001	Maize	nucleus	45.57	86.4
Zm00001d013636_P001	Maize	nucleus, plastid	42.41	76.72
VIT_02s0025g03540.t01	Wine grape	cytosol	33.12	35.36
VIT_18s0001g14360.t01	Wine grape	cytosol	33.33	35.27
VIT_06s0004g05870.t01	Wine grape	cytosol	32.91	34.98
VIT_08s0007g01630.t01	Wine grape	cytosol	32.91	34.9
VIT_10s0003g05320.t01	Wine grape	cytosol	32.7	34.83
VIT_06s0009g02020.t01	Wine grape	cytosol	32.7	34.75
VIT_02s0025g03680.t01	Wine grape	cytosol	32.7	34.68
VIT_17s0000g02450.t01	Wine grape	cytosol	32.49	34.61
VIT_16s0050g00380.t01	Wine grape	cytosol	32.7	34.52
VIT_08s0040g00980.t01	Wine grape	cytosol	32.49	34.45
VIT_00s0373g00010.t01	Wine grape	cytosol	23.0	33.85
VIT_14s0108g00440.t01	Wine grape	cytosol	29.32	30.89
VIT_18s0001g08250.t01	Wine grape	cytosol	29.11	30.6
VIT_03s0088g00380.t01	Wine grape	cytosol	28.9	30.44
VIT_08s0007g07260.t01	Wine grape	cytosol	28.06	29.82
VIT_06s0004g00480.t01	Wine grape	cytosol	27.85	29.4
VIT_00s1322g00010.t01	Wine grape	cytosol	15.19	26.18

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100267092	wikigene:100267092	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
EMBL:AM470332	ProteinID:CAN61748	ProteinID:CAN61748.1	ProteinID:CBI40476	ProteinID:CBI40476.3	UniProt:D7UCL1
EMBL:FN596755	GO:GO:0000166	GO:GO:0000930	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0031122	InterPro:Gamma_tubulin	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	EntrezGene:LOC100267092	wikigene:LOC100267092	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01164	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF7	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001984DBF	ArrayExpress:VIT_15s0046g01350
EnsemblPlantsGene:VIT_15s0046g01350	EnsemblPlants:VIT_15s0046g01350.t01	RefSeq:XP_002276643	RefSeq:XP_002276643.1	RefSeq:XP_010661882.1	:

Description

Tubulin gamma chain [Source:UniProtKB/TrEMBL;Acc:D7UCL1]

Coordinates

chr15:+:18356770..18365514

Molecular Weight (calculated)

53282.5 Da

IEP (calculated)

5.917

GRAVY (calculated)

-0.309

Length

474 amino acids

Sequence
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKEGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNS EYRNLYNHEN IFVSDHGGGA
101: GNNWASGYHQ GKGVEEDIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL SNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR TKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSRKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYEKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPDHILTG EGNASGAVDP KLAV

Best Arabidopsis Sequence Match ( AT3G61650.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF

Arabidopsis Description

TUBG1Tubulin gamma-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P38557]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.