Factsheet for GSMUA_Achr1P14750_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19069	Sorghum	cytosol	94.77	96.59
Os05t0156600-01	Rice	cytosol	94.77	96.59
Zm00001d037582_P001	Maize	cytosol, extracellular	94.14	95.95
TraesCS1D01G107300.1	Wheat	cytosol	93.72	95.52
TraesCS1B01G124800.1	Wheat	cytosol	93.72	95.52
TraesCS1A01G099400.1	Wheat	cytosol	93.72	95.52
HORVU1Hr1G023030.2	Barley	cytosol	93.72	95.52
VIT_15s0046g01350.t01	Wine grape	cytosol	91.42	92.19
KRH68880	Soybean	endoplasmic reticulum	90.38	91.14
AT5G05620.1	Thale cress	cytosol	89.54	90.3
KRG97131	Soybean	cytosol	89.54	90.3
AT3G61650.1	Thale cress	cytosol	89.54	90.3
CDY11370	Canola	cytosol	88.49	89.43
CDX71723	Canola	cytosol	88.49	89.43
Bra007622.1-P	Field mustard	cytosol	88.49	89.43
Solyc03g111380.2.1	Tomato	cytosol	88.49	89.24
PGSC0003DMT400039263	Potato	cytosol	88.28	89.03
Zm00001d009780_P003	Maize	cytosol	94.14	88.93
GSMUA_Achr4P05450_001	Banana	cytosol	24.27	41.28
GSMUA_Achr8P33350_001	Banana	cytosol	25.73	40.73
GSMUA_Achr5P12310_001	Banana	cytosol	28.24	39.47
GSMUA_Achr6P29670_001	Banana	cytosol	17.57	37.84
GSMUA_Achr8P15410_001	Banana	cytosol	18.83	37.82
GSMUA_Achr5P10720_001	Banana	cytosol	29.5	37.5
GSMUA_AchrUn_...	Banana	cytosol	28.45	37.36
GSMUA_Achr1P17290_001	Banana	cytosol	28.66	37.13
GSMUA_Achr8P07060_001	Banana	cytosol	30.13	37.02
GSMUA_Achr3P23490_001	Banana	cytosol	28.87	37.0
GSMUA_Achr5P26680_001	Banana	cytosol	29.92	36.86
GSMUA_Achr4P26250_001	Banana	cytosol	34.1	36.55
GSMUA_Achr2P01410_001	Banana	cytosol	29.71	36.41
GSMUA_Achr3P18460_001	Banana	cytosol	29.29	36.27
GSMUA_Achr6P08450_001	Banana	cytosol	29.29	36.18
GSMUA_Achr6P04600_001	Banana	cytosol	31.8	35.93
GSMUA_Achr5P00290_001	Banana	cytosol	29.5	35.88
GSMUA_Achr6P16040_001	Banana	cytosol	29.29	35.81
GSMUA_Achr10P...	Banana	cytosol	31.8	35.6
GSMUA_Achr4P11980_001	Banana	plasma membrane	32.85	35.2
GSMUA_Achr6P19990_001	Banana	cytosol	30.33	35.02
GSMUA_Achr2P17250_001	Banana	cytosol	23.64	34.35
GSMUA_Achr11P...	Banana	cytosol	25.1	34.29
GSMUA_Achr6P00620_001	Banana	cytosol	23.43	34.04
GSMUA_Achr7P17960_001	Banana	cytosol	27.82	33.5
GSMUA_Achr7P08080_001	Banana	cytosol	21.97	33.44
GSMUA_Achr11P...	Banana	cytosol	0.84	33.33
GSMUA_Achr7P01800_001	Banana	cytosol	27.2	32.1
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	29.92	31.78
GSMUA_Achr5P14830_001	Banana	cytosol	27.82	31.0
GSMUA_Achr5P21740_001	Banana	cytosol	31.59	30.02

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:GO:0000166	GO:GO:0000930
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017
GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0031122
EnsemblPlantsGene:GSMUA_Achr1G14750_001	EnsemblPlants:GSMUA_Achr1P14750_001	EnsemblPlants:GSMUA_Achr1T14750_001	InterPro:Gamma_tubulin	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	UniProt:M0RZY3	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01164
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF7	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002957F82	:	:

Description

Tubulin gamma-2 chain [Source:GMGC_GENE;Acc:GSMUA_Achr1G14750_001]

Coordinates

chr1:-:11166699..11177347

Molecular Weight (calculated)

53772.3 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.286

Length

478 amino acids

Sequence
(BLAST)

001: MPREIITIQV GQCGNQIGME FWKQLCLEHG IGKDGLLEDF ATQARVGRSC ASGGDRKDVF FYQADDQHYI PRALLMDLEP RVINGIQNSE YRNLYNHENI
101: FVSDHGGGAG NNWASGYHQG EQVVDDIMDM VDREADGSDS LEGFVLCHSI AGGTGSGMGS YLLETLNDRY SKKLVQTYSV FPNQMETSDV VVQPYNSLLT
201: LKRLTLNADC VVVLDNTALN RIAVERLHLS NPTFAQTNSL VSTVMSASTT TLRYPGYMNN DLVGLLASLI PTPRCHFLMT GYTPLTVERQ VNMIRKTTVL
301: DVMRRLLQAK NIMVSSYART KEASQAKYIS ILNIIQGDVD PTQVHESLQR IRERKLVNFI EWGPASIQVA LSRKSPYIQT THRVSGLMLA NHTSIRHLFS
401: KCLGQYEKLR KKQAFLDNYR KFPMFADNDL SEFDESREVI ESLVEEYKAC ESPDYIKWGM EEQGEASVAA ALDSKLVM

Best Arabidopsis Sequence Match ( AT5G05620.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG EYRNLYNHEN IFLSDHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IDWGPASIQV ALSKKSPYVQ TSHRVSGLML ASHTSIRHLF SRCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPGQLMTG EGNASGVADP KLAF

Arabidopsis Description

TUBG2Tubulin gamma-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P38558]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.