CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97131	Soybean	cytosol	98.95	98.95
VIT_15s0046g01350.t01	Wine grape	cytosol	95.15	95.15
AT3G61650.1	Thale cress	cytosol	94.09	94.09
AT5G05620.1	Thale cress	cytosol	93.46	93.46
CDY11370	Canola	cytosol	93.25	93.45
CDX71723	Canola	cytosol	93.25	93.45
Bra007622.1-P	Field mustard	cytosol	93.25	93.45
EES19069	Sorghum	cytosol	91.35	92.32
Os05t0156600-01	Rice	cytosol	91.35	92.32
PGSC0003DMT400039263	Potato	cytosol	90.93	90.93
Solyc03g111380.2.1	Tomato	cytosol	90.72	90.72
HORVU1Hr1G023030.2	Barley	cytosol	89.66	90.62
TraesCS1D01G107300.1	Wheat	cytosol	89.66	90.62
TraesCS1B01G124800.1	Wheat	cytosol	89.66	90.62
TraesCS1A01G099400.1	Wheat	cytosol	89.66	90.62
GSMUA_Achr1P14750_001	Banana	cytosol	91.14	90.38
Zm00001d035567_P001	Maize	nucleus	44.73	84.8
Zm00001d013636_P001	Maize	nucleus, plastid	41.14	74.43
KRH04356	Soybean	cytosol	20.25	38.25
KRH05958	Soybean	nucleus	33.76	35.63
KRH51701	Soybean	nucleus	33.54	35.49
KRH61035	Soybean	nucleus	33.54	35.41
KRH41169	Soybean	cytosol	33.12	35.28
KRH58404	Soybean	nucleus	32.7	35.07
KRH17435	Soybean	nucleus	33.76	35.01
KRH11812	Soybean	nucleus	32.91	34.98
KRH36829	Soybean	nucleus	32.91	34.98
KRH66728	Soybean	nucleus	33.12	34.97
KRH35301	Soybean	nucleus	32.91	34.82
KRG91525	Soybean	nucleus	32.91	34.82
KRH42279	Soybean	cytosol	32.49	34.76
KRH59870	Soybean	endoplasmic reticulum	32.7	34.75
KRG95065	Soybean	plasma membrane	32.91	34.67
KRH65977	Soybean	nucleus	32.49	34.3
KRH75786	Soybean	nucleus	32.49	34.3
KRH60536	Soybean	endoplasmic reticulum	32.07	34.16
KRH41834	Soybean	cytosol	32.07	34.16
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	29.54	31.53
KRH28301	Soybean	cytosol, endoplasmic reticulum	29.32	30.82
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	28.69	30.7
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.11	30.6
KRH77187	Soybean	endoplasmic reticulum	28.9	30.38
KRH58181	Soybean	nucleus	28.69	30.22
KRH52851	Soybean	cytosol, nucleus	28.69	30.09
KRH62139	Soybean	nucleus	28.69	30.09
KRH35640	Soybean	cytosol, nucleus	28.27	29.84
KRG91143	Soybean	nucleus	28.27	29.84
KRH58942	Soybean	nucleus	28.06	29.62
KRH42841	Soybean	cytosol, nucleus	28.06	29.56
KRH04357	Soybean	cytosol	6.75	18.82

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100775439	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02002126
EnsemblPlantsGene:GLYMA_03G255800	GO:GO:0000166	GO:GO:0000930	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0031122	InterPro:Gamma_tubulin	UniProt:I1JRY0	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	ProteinID:KRH68879.1	EnsemblPlants:KRH68880	ProteinID:KRH68880	ProteinID:KRH68880.1
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01164	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF7	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000233A648	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:45068545..45074212

Molecular Weight (calculated)

53267.4 Da

IEP (calculated)

5.616

GRAVY (calculated)

-0.319

Length

474 amino acids

Sequence
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNS DYRNLYNHEN IFVSDHGGGA
101: GNNWASGYDQ GQHVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL SNPSFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANLIRKTTV LDVMRRLLQA
301: KNIMVSSYAR TKDASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSRKSPYVQ TAHRVSGLML ASHTSIRHLF SKTLSQYEKL
401: RKKQAFIDVY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPNNMLTG EGNATGSLDS KSVA

Best Arabidopsis Sequence Match ( AT3G61650.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF

Arabidopsis Description

TUBG1Tubulin gamma-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P38557]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.