CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH17436
KRH22160
KRH27177
KRH69862

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	KRH22160	AT2G30410.1	20638386
AT4G20890.1	KRH27177	AT2G30410.1	20638386
AT5G44340.1	KRH17436	AT3G50960.1	18390592
AT5G44340.1	KRH69862	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42279	Soybean	cytosol	99.32	99.1
Zm00001d036626_P001	Maize	cytosol	50.23	97.8
KRH11812	Soybean	nucleus	98.64	97.76
KRH36829	Soybean	nucleus	98.42	97.53
VIT_10s0003g05320.t01	Wine grape	cytosol	97.96	97.3
GSMUA_Achr11P...	Banana	cytosol	76.92	97.14
EES04582	Sorghum	cytosol	97.74	96.86
EER90205	Sorghum	cytosol	97.74	96.86
Zm00001d046996_P001	Maize	cytosol	50.45	96.54
Os02t0167300-01	Rice	plasma membrane	97.51	96.42
Os06t0671900-01	Rice	plasma membrane	97.29	96.41
TraesCS6B01G169300.1	Wheat	cytosol	96.83	96.4
GSMUA_Achr5P26680_001	Banana	cytosol	84.62	96.39
TraesCS6D01G130500.2	Wheat	golgi	96.83	96.18
Os03t0780600-01	Rice	plastid	96.61	96.17
CDY31638	Canola	cytosol	96.61	96.17
GSMUA_Achr2P01410_001	Banana	cytosol	84.84	96.15
EER93354	Sorghum	cytosol	96.61	95.96
HORVU6Hr1G027620.1	Barley	plasma membrane	96.61	95.74
GSMUA_Achr3P23490_001	Banana	cytosol	80.77	95.71
CDX84283	Canola	cytosol	96.38	95.52
GSMUA_Achr8P07060_001	Banana	cytosol	83.94	95.37
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	96.15	95.29
TraesCS7D01G454200.1	Wheat	cytosol	96.15	95.29
TraesCS7A01G466600.1	Wheat	golgi	96.15	95.29
Zm00001d013139_P001	Maize	cytosol	63.12	95.22
Zm00001d015348_P002	Maize	plastid	95.48	95.05
TraesCS5A01G416400.1	Wheat	cytosol	95.48	95.05
GSMUA_Achr5P00290_001	Banana	cytosol	84.39	94.91
TraesCS5D01G424100.1	Wheat	cytosol	95.48	94.83
TraesCS5B01G418700.1	Wheat	golgi	95.48	94.83
Zm00001d034022_P001	Maize	cytosol	56.11	94.66
AT5G44340.1	Thale cress	cytosol	94.8	94.37
KRH75786	Soybean	nucleus	95.48	93.99
KRH65977	Soybean	nucleus	95.48	93.99
CDX94014	Canola	cytosol	94.8	93.95
KRH05958	Soybean	nucleus	95.25	93.76
CDX98679	Canola	cytosol	94.57	93.72
Bra020912.1-P	Field mustard	cytosol	94.57	93.72
CDY60599	Canola	cytosol	94.34	93.71
AT4G20890.1	Thale cress	cytosol	94.12	93.69
KRH51701	Soybean	nucleus	94.8	93.53
CDY31428	Canola	cytosol	94.34	93.5
CDX76444	Canola	cytosol	94.34	93.5
CDY69221	Canola	cytosol	94.12	93.48
CDX96965	Canola	cytosol	94.12	93.48
Bra027544.1-P	Field mustard	cytosol	94.12	93.48
KRG91525	Soybean	nucleus	94.57	93.3
KRH35301	Soybean	nucleus	94.57	93.3
CDY14924	Canola	cytosol	94.12	93.27
Bra039506.1-P	Field mustard	cytosol	94.12	93.27
CDY49002	Canola	cytosol	93.89	93.26
CDY13108	Canola	cytosol	93.89	93.26
Bra038795.1-P	Field mustard	cytosol	93.89	93.26
Bra033737.1-P	Field mustard	cytosol	93.89	93.26
CDX79013	Canola	cytosol	93.89	93.05
CDX82788	Canola	cytosol	93.89	93.05
KRG95065	Soybean	plasma membrane	94.57	92.89
KRH61035	Soybean	nucleus	94.34	92.87
KRH17435	Soybean	nucleus	95.7	92.56
KRH66728	Soybean	nucleus	93.89	92.43
Bra013481.1-P	Field mustard	cytosol	92.76	91.93
GSMUA_Achr6P04600_001	Banana	cytosol	87.56	91.49
KRH41169	Soybean	cytosol	92.08	91.46
KRH41834	Soybean	cytosol	91.86	91.24
KRH59870	Soybean	endoplasmic reticulum	91.63	90.81
KRH60536	Soybean	endoplasmic reticulum	91.4	90.79
Bra005395.1-P	Field mustard	cytosol	81.0	88.83
GSMUA_Achr6P19990_001	Banana	cytosol	80.09	85.51
HORVU5Hr1G100900.2	Barley	cytosol	95.48	83.4
KRH04356	Soybean	cytosol	26.7	47.01
KRH58942	Soybean	nucleus	42.99	42.32
KRH35640	Soybean	cytosol, nucleus	42.99	42.32
KRH42841	Soybean	cytosol, nucleus	42.99	42.22
KRG91143	Soybean	nucleus	42.76	42.09
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	42.08	41.99
KRH77187	Soybean	endoplasmic reticulum	42.76	41.91
KRH28301	Soybean	cytosol, endoplasmic reticulum	42.53	41.69
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	42.53	41.69
KRH58181	Soybean	nucleus	42.31	41.56
KRH62139	Soybean	nucleus	42.31	41.37
KRH52851	Soybean	cytosol, nucleus	42.31	41.37
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	41.18	40.99
KRH04357	Soybean	cytosol	13.57	35.29
KRH68880	Soybean	endoplasmic reticulum	35.07	32.7
KRG97131	Soybean	cytosol	35.07	32.7

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100784236	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02003258
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G126100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
UniProt:I1K2Y0	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH58404	ProteinID:KRH58404
ProteinID:KRH58404.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF262	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000E64769	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:31949858..31952777

Molecular Weight (calculated)

49783.8 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.391

Length

442 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGKYSGDS ELQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LKMSSTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEEYEDEEE EA

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.