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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23508561 doi
Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck
Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d007600_P001
Zm00001d007720_P003
Zm00001d009423_P001
Zm00001d018478_P001
Zm00001d025839_P001
Zm00001d030574_P001
Zm00001d033260_P001
Zm00001d048892_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G20890.1 Zm00001d018478_P001 AT2G30410.1 20638386
AT5G44340.1 Zm00001d007600_P001 AT3G50960.1 18390592
AT5G44340.1 Zm00001d007720_P003 AT3G50960.1 18390592
AT5G44340.1 Zm00001d009423_P001 AT3G50960.1 18390592
AT5G44340.1 Zm00001d025839_P001 AT3G50960.1 18390592
AT5G44340.1 Zm00001d030574_P001 AT3G50960.1 18390592
AT5G44340.1 Zm00001d033260_P001 AT3G50960.1 18390592
AT5G44340.1 Zm00001d048892_P001 AT3G50960.1 18390592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d036626_P001 Maize cytosol 50.23 98.24
HORVU6Hr1G027620.1 Barley plasma membrane 97.97 97.53
Os06t0671900-01 Rice plasma membrane 97.52 97.09
TraesCS6D01G130500.2 Wheat golgi 97.3 97.08
Zm00001d046996_P001 Maize cytosol 50.45 96.97
TraesCS6B01G169300.1 Wheat cytosol 96.85 96.85
GSMUA_Achr11P... Banana cytosol 76.13 96.57
EER90205 Sorghum cytosol 96.62 96.19
KRH36829 Soybean nucleus 96.62 96.19
KRH11812 Soybean nucleus 96.62 96.19
CDY31638 Canola cytosol 95.72 95.72
VIT_10s0003g05320.t01 Wine grape cytosol 95.72 95.51
KRH58404 Soybean nucleus 95.05 95.48
GSMUA_Achr8P07060_001 Banana cytosol 83.56 95.37
GSMUA_Achr5P26680_001 Banana cytosol 83.33 95.36
TraesCS7D01G454200.1 Wheat cytosol 95.72 95.29
TraesCS7A01G466600.1 Wheat golgi 95.72 95.29
GSMUA_Achr2P01410_001 Banana cytosol 83.56 95.13
HORVU7Hr1G107100.2 Barley cytosol, nucleus 95.5 95.07
CDX84283 Canola cytosol 95.5 95.07
KRH42279 Soybean cytosol 94.82 95.03
GSMUA_Achr3P23490_001 Banana cytosol 79.73 94.91
Zm00001d013139_P001 Maize cytosol 62.16 94.2
Zm00001d040509_P001 Maize cytosol 47.07 94.14
Zm00001d027295_P002 Maize plasma membrane 94.37 93.95
Zm00001d012556_P001 Maize plastid 94.59 93.75
GSMUA_Achr5P00290_001 Banana cytosol 82.66 93.38
Zm00001d034022_P001 Maize cytosol 54.95 93.13
Bra020912.1-P Field mustard cytosol 93.47 93.05
CDX98679 Canola cytosol 93.47 93.05
CDX94014 Canola cytosol 93.47 93.05
AT4G20890.1 Thale cress cytosol 93.02 93.02
CDY31428 Canola cytosol 93.24 92.83
CDX76444 Canola cytosol 93.24 92.83
CDX96965 Canola cytosol 93.02 92.81
Bra027544.1-P Field mustard cytosol 93.02 92.81
AT5G44340.1 Thale cress cytosol 92.79 92.79
CDY14924 Canola cytosol 93.02 92.6
Bra039506.1-P Field mustard cytosol 93.02 92.6
Bra038795.1-P Field mustard cytosol 92.79 92.58
CDY60599 Canola cytosol 92.79 92.58
Zm00001d033457_P001 Maize plasma membrane 92.79 92.58
CDY13108 Canola cytosol 92.79 92.58
CDX79013 Canola cytosol 92.79 92.38
CDX82788 Canola cytosol 92.79 92.38
Zm00001d013612_P002 Maize plasma membrane 92.79 92.17
CDY69221 Canola cytosol 92.12 91.91
CDY49002 Canola cytosol 91.89 91.69
Bra033737.1-P Field mustard cytosol 91.89 91.69
Bra013481.1-P Field mustard cytosol 91.67 91.26
Zm00001d008216_P002 Maize cytosol 48.2 89.54
Bra005395.1-P Field mustard cytosol 80.86 89.08
Zm00001d043158_P001 Maize plasma membrane 94.37 84.48
GSMUA_Achr6P19990_001 Banana cytosol 78.38 84.06
Zm00001d010275_P001 Maize cytosol 54.05 80.54
Zm00001d026623_P001 Maize cytosol, plastid 46.62 49.88
Zm00001d006651_P005 Maize plasma membrane 43.24 42.67
Zm00001d013367_P001 Maize plastid 43.24 42.57
Zm00001d033850_P003 Maize cytosol 43.24 42.57
Zm00001d021891_P001 Maize cytosol 43.02 42.44
Zm00001d013159_P001 Maize cytosol 41.67 41.11
Zm00001d048065_P002 Maize cytosol, mitochondrion 41.44 41.07
Zm00001d037582_P001 Maize cytosol, extracellular 34.68 32.84
Zm00001d009780_P003 Maize cytosol 34.68 30.43
Zm00001d035567_P001 Maize nucleus 15.54 27.6
Zm00001d013636_P001 Maize nucleus, plastid 15.54 26.34
Protein Annotations
Gene3D:1.10.287.600EntrezGene:100383576MapMan:20.1.1.2Gene3D:3.30.1330.20Gene3D:3.40.50.1440ProteinID:AQK68710.1
EMBL:BT067654InterPro:Beta-tubulin_BSInterPro:Beta_tubulinUniProt:C0PH85ncoils:CoilGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005198GO:GO:0005200GO:GO:0005488
GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856
GO:GO:0005874GO:GO:0007010GO:GO:0007017GO:GO:0008150GO:GO:0009987GO:GO:0016043
GO:GO:0016787InterPro:IPR023123InterPro:IPR036525InterPro:IPR037103PFAM:PF00091PFAM:PF03953
PRINTS:PR01161PRINTS:PR01163ScanProsite:PS00227ScanProsite:PS00228PANTHER:PTHR11588PANTHER:PTHR11588:SF245
SMART:SM00864SMART:SM00865SUPFAM:SSF52490SUPFAM:SSF55307InterPro:Tub_FtsZ_CInterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-domInterPro:Tubulin/FtsZ_C_sfInterPro:Tubulin/FtsZ_GTPase_sfInterPro:Tubulin_CInterPro:Tubulin_CSInterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000195CF2EEnsemblPlantsGene:Zm00001d015348EnsemblPlants:Zm00001d015348_P002EnsemblPlants:Zm00001d015348_T002SEG:seg:
Description
Tubulin beta-4 chain
Coordinates
chr5:+:85736319..85739753
Molecular Weight (calculated)
49661.8 Da
IEP (calculated)
4.580
GRAVY (calculated)
-0.321
Length
444 amino acids
Sequence
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGKYAGDS DLQLERINVY YNEAGGGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDIPPTG LAMASTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA EEEEEYKEGD EVAA
Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
Arabidopsis Description
TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.