Factsheet for Zm00001d026623_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012556_P001	Maize	plastid	51.81	47.99
Zm00001d027295_P002	Maize	plasma membrane	51.08	47.53
Zm00001d013612_P002	Maize	plasma membrane	50.6	46.98
Zm00001d033457_P001	Maize	plasma membrane	50.12	46.74
Zm00001d015348_P002	Maize	plastid	49.88	46.62
KRH41169	Soybean	cytosol	49.4	46.07
KRH59870	Soybean	endoplasmic reticulum	48.92	45.52
VIT_02s0025g03540.t01	Wine grape	cytosol	48.67	45.5
Zm00001d043158_P001	Maize	plasma membrane	51.08	42.74
Zm00001d013139_P001	Maize	cytosol	26.75	37.88
Zm00001d034022_P001	Maize	cytosol	19.76	31.3
Zm00001d010275_P001	Maize	cytosol	19.04	26.51
Zm00001d013367_P001	Maize	plastid	22.89	21.06
Zm00001d033850_P003	Maize	cytosol	22.89	21.06
Zm00001d021891_P001	Maize	cytosol	22.65	20.89
Zm00001d006651_P005	Maize	plasma membrane	22.65	20.89
Zm00001d048065_P002	Maize	cytosol, mitochondrion	22.41	20.76
Zm00001d013159_P001	Maize	cytosol	21.45	19.78
Zm00001d008216_P002	Maize	cytosol	11.33	19.67
Zm00001d036626_P001	Maize	cytosol	10.6	19.38
Zm00001d046996_P001	Maize	cytosol	10.6	19.05
Zm00001d040509_P001	Maize	cytosol	10.12	18.92
Zm00001d035567_P001	Maize	nucleus	10.84	18.0
Zm00001d013636_P001	Maize	nucleus, plastid	11.33	17.94
Zm00001d037582_P001	Maize	cytosol, extracellular	19.04	16.84
Zm00001d009780_P003	Maize	cytosol	19.52	16.01

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	UniProt:A0A1D6JI52	ProteinID:AQK47285.1
InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
PFAM:PF03953	PANTHER:PTHR11588	PANTHER:PTHR11588:SF256	SMART:SM00865	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	UniParc:UPI0008456C57
EnsemblPlantsGene:Zm00001d026623	EnsemblPlants:Zm00001d026623_P001	EnsemblPlants:Zm00001d026623_T001	SEG:seg	:	:

Description

Tubulin beta-7 chain

Coordinates

chr10:+:149113706..149116474

Molecular Weight (calculated)

46841.8 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.285

Length

415 amino acids

Sequence
(BLAST)

001: MLSSFILREL SGEDLKVKTV PLPQRNSMFS SRPKYKKKSS TYNTTTPFHS LQAEKLREKL RQECLRKGTE LAHGVADALF AVPPTEDLDG PIVHLPLPVV
101: RLPREKHVSE EAGNHLFVES CIPLHDYMYI IVSQDNATVT LLSNSHVSFL QLGAGTSLPR LVAAKVGADV TLTDIAQNAE AFKEFMHHLT AVCKKLSQRF
201: CNRSISVTEY AMHFASNHMT SSPIGDLNHL ISATMSDVTC CLRFLGQLNS DLCKLAVNLI TPRLHFFMVG FAPLTSCGSQ QYPYAIFRGK MSTKEVDEQM
301: INVQNKNSSY FVEWIPNNVK SSVCDIPPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTD EGMDEMEFTE AESNMNDLVS EYHQYQDATA
401: DEEAEYEDEE AIQDE

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.