Factsheet for Zm00001d033850_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013367_P001	Maize	plastid	99.33	99.33
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	98.89	98.89
KXG37668	Sorghum	cytosol	98.89	98.89
TraesCS4A01G257800.1	Wheat	cytosol	98.89	98.89
TraesCS4B01G056700.1	Wheat	cytosol	98.89	98.89
TraesCS4D01G057000.1	Wheat	cytosol	98.89	98.89
TraesCS1A01G350200.1	Wheat	golgi	98.23	98.23
TraesCS1B01G364500.3	Wheat	cytosol	98.23	98.23
TraesCS1D01G353100.5	Wheat	cytosol	98.23	98.23
HORVU1Hr1G081280.1	Barley	cytosol	98.0	98.0
Os11t0247300-01	Rice	plasma membrane	97.78	97.78
VIT_00s1322g00010.t01	Wine grape	cytosol	59.2	97.09
GSMUA_Achr7P17960_001	Banana	cytosol	84.7	96.22
Solyc12g088180.1.1	Tomato	cytosol	46.78	92.95
Zm00001d013159_P001	Maize	cytosol	92.46	92.67
Zm00001d006651_P005	Maize	plasma membrane	90.91	91.11
Zm00001d021891_P001	Maize	cytosol	90.91	91.11
Zm00001d048065_P002	Maize	cytosol, mitochondrion	87.14	87.72
CDY46272	Canola	cytosol	45.23	70.59
Bra020572.1-P	Field mustard	cytosol	63.86	61.54
CDY05559	Canola	mitochondrion	63.86	57.26
Zm00001d040509_P001	Maize	cytosol	24.17	49.1
Zm00001d036626_P001	Maize	cytosol	23.73	47.14
Zm00001d046996_P001	Maize	cytosol	23.95	46.75
Zm00001d034022_P001	Maize	cytosol	27.05	46.56
Zm00001d013139_P001	Maize	cytosol	29.71	45.73
Zm00001d008216_P002	Maize	cytosol	24.17	45.61
Zm00001d015348_P002	Maize	plastid	42.57	43.24
Zm00001d027295_P002	Maize	plasma membrane	42.35	42.83
Zm00001d012556_P001	Maize	plastid	42.13	42.41
Zm00001d013612_P002	Maize	plasma membrane	40.13	40.49
Zm00001d033457_P001	Maize	plasma membrane	39.91	40.45
Zm00001d010275_P001	Maize	cytosol	26.61	40.27
Zm00001d043158_P001	Maize	plasma membrane	42.57	38.71
Zm00001d037582_P001	Maize	cytosol, extracellular	30.6	29.42
Zm00001d009780_P003	Maize	cytosol	31.04	27.67
Zm00001d013636_P001	Maize	nucleus, plastid	13.75	23.66
Zm00001d035567_P001	Maize	nucleus	13.08	23.6
Zm00001d026623_P001	Maize	cytosol, plastid	21.06	22.89

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100037751	EntrezGene:103643947	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
UniProt:A0A1R3MJR7	InterPro:Alpha_tubulin	ProteinID:CAA33733.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	ProteinID:ONM08784.1	ProteinID:ONM08801.1	UniProt:P14641
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF242	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000013697D	EnsemblPlantsGene:Zm00001d033850	EnsemblPlants:Zm00001d033850_P003	EnsemblPlants:Zm00001d033850_T003	SEG:seg

Description

alpha tubulin2 alpha tubulin1

Coordinates

chr1:+:275839812..275843675

Molecular Weight (calculated)

49733.8 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.190

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QADGQMPGDK TIGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AILLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN STSVVEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEFD EGEEGDDGDE Y

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.