Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040509_P001 | Maize | cytosol | 92.47 | 99.55 |
| Zm00001d036626_P001 | Maize | cytosol | 87.45 | 92.07 |
| Zm00001d046996_P001 | Maize | cytosol | 87.45 | 90.48 |
| Zm00001d034022_P001 | Maize | cytosol | 84.1 | 76.72 |
| Zm00001d010275_P001 | Maize | cytosol | 93.31 | 74.83 |
| Zm00001d013139_P001 | Maize | cytosol | 84.94 | 69.28 |
| Zm00001d012556_P001 | Maize | plastid | 93.31 | 49.78 |
| VIT_02s0025g03680.t01 | Wine grape | cytosol | 92.05 | 49.22 |
| Zm00001d027295_P002 | Maize | plasma membrane | 91.63 | 49.1 |
| CDX80390 | Canola | cytosol | 92.05 | 49.0 |
| Bra009710.1-P | Field mustard | cytosol | 92.05 | 49.0 |
| Solyc03g025730.2.1 | Tomato | nucleus | 91.21 | 48.99 |
| AT5G23860.1 | Thale cress | cytosol | 91.63 | 48.78 |
| KRH65977 | Soybean | nucleus | 91.63 | 48.78 |
| KRH75786 | Soybean | nucleus | 91.63 | 48.78 |
| PGSC0003DMT400037093 | Potato | cytosol | 91.21 | 48.77 |
| CDY67078 | Canola | cytosol | 80.33 | 48.73 |
| KRG91525 | Soybean | nucleus | 91.21 | 48.66 |
| KRH35301 | Soybean | nucleus | 91.21 | 48.66 |
| Bra033796.1-P | Field mustard | cytosol | 91.21 | 48.55 |
| AT5G62690.1 | Thale cress | cytosol | 91.21 | 48.44 |
| CDY38073 | Canola | cytosol | 91.21 | 48.44 |
| CDY00319 | Canola | cytosol | 91.21 | 48.44 |
| CDX86102 | Canola | plasma membrane | 91.21 | 48.44 |
| CDX84345 | Canola | cytosol | 91.21 | 48.44 |
| Bra019493.1-P | Field mustard | cytosol | 91.21 | 48.44 |
| Bra010114.1-P | Field mustard | cytosol | 91.21 | 48.44 |
| AT5G62700.1 | Thale cress | cytosol | 91.21 | 48.44 |
| Bra018184.1-P | Field mustard | cytosol | 90.8 | 48.33 |
| VIT_16s0050g00380.t01 | Wine grape | cytosol | 90.8 | 48.33 |
| Solyc06g035970.2.1 | Tomato | nucleus | 90.38 | 48.32 |
| Solyc10g086760.1.1 | Tomato | nucleus | 90.38 | 48.21 |
| Zm00001d015348_P002 | Maize | plastid | 89.54 | 48.2 |
| VIT_08s0007g01630.t01 | Wine grape | cytosol | 89.96 | 48.1 |
| PGSC0003DMT400076938 | Potato | cytosol | 89.96 | 48.1 |
| PGSC0003DMT400028800 | Potato | cytosol | 89.96 | 48.1 |
| PGSC0003DMT400049212 | Potato | cytosol | 89.96 | 47.99 |
| Solyc10g085020.1.1 | Tomato | nucleus | 90.38 | 47.58 |
| VIT_06s0004g05870.t01 | Wine grape | cytosol | 88.7 | 47.53 |
| CDX88051 | Canola | cytosol | 82.43 | 46.24 |
| Zm00001d013612_P002 | Maize | plasma membrane | 86.19 | 46.09 |
| Zm00001d033457_P001 | Maize | plasma membrane | 85.77 | 46.07 |
| CDY21784 | Canola | cytosol | 81.59 | 45.67 |
| CDX99087 | Canola | cytosol | 81.59 | 45.67 |
| Zm00001d043158_P001 | Maize | plasma membrane | 93.31 | 44.96 |
| Zm00001d021891_P001 | Maize | cytosol | 46.03 | 24.44 |
| Zm00001d013159_P001 | Maize | cytosol | 45.61 | 24.22 |
| Zm00001d006651_P005 | Maize | plasma membrane | 45.61 | 24.22 |
| Zm00001d013367_P001 | Maize | plastid | 45.61 | 24.17 |
| Zm00001d033850_P003 | Maize | cytosol | 45.61 | 24.17 |
| Zm00001d048065_P002 | Maize | cytosol, mitochondrion | 44.77 | 23.88 |
| Zm00001d037582_P001 | Maize | cytosol, extracellular | 40.17 | 20.47 |
| Zm00001d009780_P003 | Maize | cytosol | 40.17 | 18.97 |
| Zm00001d026623_P001 | Maize | cytosol, plastid | 19.67 | 11.33 |
| Zm00001d035567_P001 | Maize | nucleus | 9.21 | 8.8 |
| Zm00001d013636_P001 | Maize | nucleus, plastid | 8.79 | 8.02 |
Protein Annotations
| Gene3D:3.40.50.1440 | MapMan:35.1 | UniProt:A0A1D6FAY2 | ProteinID:AQK89206.1 | ProteinID:AQK89207.1 | InterPro:Beta-tubulin_BS |
| InterPro:Beta_tubulin | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 |
| GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | InterPro:IPR036525 | PFAM:PF00091 | PRINTS:PR01161 | PRINTS:PR01163 |
| ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF106 | SMART:SM00864 | SUPFAM:SSF52490 |
| InterPro:Tubulin | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI000844FA41 | EnsemblPlantsGene:Zm00001d008216 |
| EnsemblPlants:Zm00001d008216_P002 | EnsemblPlants:Zm00001d008216_T002 | SEG:seg | : | : | : |
Description
Tubulin beta-6 chain
Coordinates
chr8:+:1519559..1521275
Molecular Weight (calculated)
26580.7 Da
IEP (calculated)
4.479
GRAVY (calculated)
-0.110
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGTS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SCESFILMFN FPLLKLCYL
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SCESFILMFN FPLLKLCYL
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
Arabidopsis Description
TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.