CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009710.1-P	Field mustard	cytosol	99.78	99.78
CDX88051	Canola	cytosol	94.65	99.77
AT5G23860.1	Thale cress	cytosol	99.11	99.11
KRH35301	Soybean	nucleus	97.77	97.99
KRG91525	Soybean	nucleus	97.77	97.99
CDY67078	Canola	cytosol	85.52	97.46
VIT_02s0025g03680.t01	Wine grape	cytosol	96.88	97.32
Solyc06g035970.2.1	Tomato	nucleus	96.44	96.87
PGSC0003DMT400076938	Potato	cytosol	96.44	96.87
Zm00001d040509_P001	Maize	cytosol	47.88	96.85
Os03t0105600-01	Rice	plasma membrane	96.21	96.64
EER95686	Sorghum	cytosol	95.99	96.64
Solyc03g025730.2.1	Tomato	nucleus	95.77	96.63
TraesCS5A01G534300.1	Wheat	cytosol	95.99	96.42
PGSC0003DMT400037093	Potato	cytosol	95.99	96.42
TraesCSU01G137900.1	Wheat	cytosol	95.99	96.21
GSMUA_Achr1P17290_001	Banana	cytosol	78.84	95.94
CDY45452	Canola	cytosol	95.77	95.77
CDY51360	Canola	cytosol	95.77	95.77
TraesCS4B01G366500.1	Wheat	cytosol	95.77	95.77
CDX97877	Canola	cytosol	95.77	95.77
CDY53366	Canola	cytosol	95.77	95.77
CDX84345	Canola	cytosol	95.55	95.33
CDY38073	Canola	cytosol	95.55	95.33
CDY00319	Canola	cytosol	95.55	95.33
CDX86102	Canola	plasma membrane	95.55	95.33
CDX99087	Canola	cytosol	90.42	95.08
CDY21784	Canola	cytosol	90.42	95.08
CDY31638	Canola	cytosol	93.1	94.14
CDX84283	Canola	cytosol	93.1	93.72
CDX68422	Canola	cytosol	59.69	93.38
CDX94014	Canola	cytosol	92.2	92.83
CDY31428	Canola	cytosol	91.98	92.6
CDX98679	Canola	cytosol	91.98	92.6
CDX82788	Canola	cytosol	91.76	92.38
CDX76444	Canola	cytosol	91.76	92.38
CDX79013	Canola	cytosol	91.76	92.38
CDX69693	Canola	cytosol	94.65	92.19
CDX87664	Canola	cytosol	91.76	92.17
CDX73198	Canola	cytosol	91.76	92.17
Zm00001d008216_P002	Maize	cytosol	49.0	92.05
CDY60599	Canola	cytosol	91.09	91.91
CDX96965	Canola	cytosol	91.09	91.91
CDY14924	Canola	cytosol	91.09	91.7
CDY69221	Canola	cytosol	90.87	91.69
CDY13108	Canola	cytosol	90.87	91.69
CDY49002	Canola	cytosol	90.65	91.46
CDX97180	Canola	cytosol	94.65	88.36
CDY25017	Canola	cytosol	39.2	42.93
CDY66630	Canola	cytosol	41.43	42.76
CDY03583	Canola	cytosol	42.32	42.22
CDY45043	Canola	cytosol	42.32	42.22
CDY28123	Canola	cytosol	42.09	42.0
CDY50974	Canola	cytosol	42.09	42.0
CDY42294	Canola	cytosol	42.09	42.0
CDY42295	Canola	cytosol	42.09	42.0
CDY44941	Canola	cytosol	41.87	41.78
CDY44942	Canola	cytosol	41.87	41.78
CDX70890	Canola	cytosol	41.65	41.56
CDX88875	Canola	cytosol	41.65	41.56
CDX92502	Canola	cytosol	41.43	41.33
CDX92501	Canola	cytosol	41.43	41.33
CDY29334	Canola	cytosol	39.42	41.07
CDY35856	Canola	cytosol	11.36	34.23
CDY11370	Canola	cytosol	34.97	33.19
CDX71723	Canola	cytosol	34.97	33.19
CDY46272	Canola	cytosol	18.71	29.07
CDY05559	Canola	mitochondrion	28.95	25.84

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078CU52	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	EnsemblPlants:CDX80390	ProteinID:CDX80390	ProteinID:CDX80390.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00133456001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EE2846
SEG:seg	:	:	:	:	:

Description

BnaC07g30540D

Coordinates

chrLK031821:+:187310..189679

Molecular Weight (calculated)

50583.7 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.372

Length

449 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGES DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEEGYEYEE DEEEVLEEQ

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.