Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009710.1-P | Field mustard | cytosol | 99.33 | 99.33 |
| CDX88051 | Canola | cytosol | 94.21 | 99.3 |
| CDX80390 | Canola | cytosol | 99.11 | 99.11 |
| KRH35301 | Soybean | nucleus | 97.77 | 97.99 |
| KRG91525 | Soybean | nucleus | 97.77 | 97.99 |
| VIT_16s0050g00380.t01 | Wine grape | cytosol | 97.33 | 97.33 |
| TraesCS5A01G534300.1 | Wheat | cytosol | 96.44 | 96.87 |
| Solyc06g035970.2.1 | Tomato | nucleus | 96.44 | 96.87 |
| EER95686 | Sorghum | cytosol | 96.21 | 96.86 |
| Solyc03g025730.2.1 | Tomato | nucleus | 95.99 | 96.85 |
| TraesCSU01G137900.1 | Wheat | cytosol | 96.44 | 96.65 |
| PGSC0003DMT400076938 | Potato | cytosol | 96.21 | 96.64 |
| PGSC0003DMT400037093 | Potato | cytosol | 96.21 | 96.64 |
| Os03t0105600-01 | Rice | plasma membrane | 95.99 | 96.42 |
| Zm00001d040509_P001 | Maize | cytosol | 47.66 | 96.4 |
| TraesCS4B01G366500.1 | Wheat | cytosol | 96.21 | 96.21 |
| GSMUA_Achr1P17290_001 | Banana | cytosol | 78.84 | 95.94 |
| AT5G62690.1 | Thale cress | cytosol | 95.77 | 95.56 |
| AT5G62700.1 | Thale cress | cytosol | 95.77 | 95.56 |
| AT2G29550.1 | Thale cress | cytosol | 95.55 | 95.55 |
| AT5G12250.1 | Thale cress | cytosol | 94.43 | 94.43 |
| AT1G75780.1 | Thale cress | cytosol | 92.2 | 92.62 |
| AT4G20890.1 | Thale cress | cytosol | 91.31 | 92.34 |
| Zm00001d008216_P002 | Maize | cytosol | 48.78 | 91.63 |
| AT5G44340.1 | Thale cress | cytosol | 90.42 | 91.44 |
| AT1G20010.1 | Thale cress | cytosol | 91.09 | 91.09 |
| AT1G04820.1 | Thale cress | cytosol | 42.09 | 42.0 |
| AT1G50010.1 | Thale cress | cytosol | 42.09 | 42.0 |
| AT4G14960.2 | Thale cress | cytosol | 42.09 | 42.0 |
| AT1G64740.1 | Thale cress | cytosol | 41.87 | 41.78 |
| AT5G19770.1 | Thale cress | cytosol | 41.65 | 41.56 |
| AT5G19780.1 | Thale cress | cytosol | 41.65 | 41.56 |
| AT3G61650.1 | Thale cress | cytosol | 34.97 | 33.12 |
| AT5G05620.1 | Thale cress | cytosol | 34.52 | 32.7 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:832451 | UniProt:A0A178UKM5 |
| ProteinID:AAA32886.1 | ProteinID:AED93223.1 | ProteinID:AED93224.1 | ArrayExpress:AT5G23860 | EnsemblPlantsGene:AT5G23860 | RefSeq:AT5G23860 |
| TAIR:AT5G23860 | RefSeq:AT5G23860-TAIR-G | EnsemblPlants:AT5G23860.1 | TAIR:AT5G23860.1 | EMBL:AY054693 | EMBL:AY081473 |
| Unigene:At.330 | ProteinID:BAB10059.1 | InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0006950 | GO:GO:0007010 | GO:GO:0007017 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0045298 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | RefSeq:NP_001190373.1 |
| RefSeq:NP_568437.1 | ProteinID:OAO94185.1 | UniProt:P29516 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005059 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009015 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 |
| PANTHER:PTHR11588:SF264 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | Symbol:TUB8 |
| InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C |
| InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0000136A08 | SEG:seg | : | : |
Description
TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
Coordinates
chr5:+:8042853..8044934
Molecular Weight (calculated)
50609.8 Da
IEP (calculated)
4.463
GRAVY (calculated)
-0.377
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.