Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008903.1-P | Field mustard | cytosol | 98.0 | 98.21 |
| KRG95065 | Soybean | plasma membrane | 96.88 | 96.67 |
| KRH66728 | Soybean | nucleus | 96.66 | 96.66 |
| VIT_08s0040g00980.t01 | Wine grape | cytosol | 95.77 | 96.2 |
| GSMUA_Achr6P16040_001 | Banana | cytosol | 83.74 | 96.16 |
| GSMUA_Achr6P08450_001 | Banana | cytosol | 82.85 | 96.12 |
| CDX69693 | Canola | cytosol | 98.0 | 95.44 |
| AT5G23860.1 | Thale cress | cytosol | 94.43 | 94.43 |
| AT2G29550.1 | Thale cress | cytosol | 94.43 | 94.43 |
| AT5G62690.1 | Thale cress | cytosol | 93.99 | 93.78 |
| AT5G62700.1 | Thale cress | cytosol | 93.99 | 93.78 |
| AT1G75780.1 | Thale cress | cytosol | 92.2 | 92.62 |
| AT4G20890.1 | Thale cress | cytosol | 90.65 | 91.67 |
| CDX97180 | Canola | cytosol | 98.0 | 91.48 |
| AT5G44340.1 | Thale cress | cytosol | 90.42 | 91.44 |
| AT1G20010.1 | Thale cress | cytosol | 91.31 | 91.31 |
| AT1G04820.1 | Thale cress | cytosol | 42.54 | 42.44 |
| AT1G50010.1 | Thale cress | cytosol | 42.54 | 42.44 |
| AT4G14960.2 | Thale cress | cytosol | 42.32 | 42.22 |
| AT5G19770.1 | Thale cress | cytosol | 42.09 | 42.0 |
| AT5G19780.1 | Thale cress | cytosol | 42.09 | 42.0 |
| AT1G64740.1 | Thale cress | cytosol | 41.87 | 41.78 |
| AT3G61650.1 | Thale cress | cytosol | 35.19 | 33.33 |
| AT5G05620.1 | Thale cress | cytosol | 34.97 | 33.12 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:831100 | UniProt:A0A178UPR2 |
| ProteinID:AAA32884.1 | ProteinID:AED91783.1 | EMBL:AF360260 | ArrayExpress:AT5G12250 | EnsemblPlantsGene:AT5G12250 | RefSeq:AT5G12250 |
| TAIR:AT5G12250 | RefSeq:AT5G12250-TAIR-G | EnsemblPlants:AT5G12250.1 | TAIR:AT5G12250.1 | EMBL:AY040074 | ProteinID:BAB10043.1 |
| InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | CHEMBL:CHEMBL2424501 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0005886 | GO:GO:0006950 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009409 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0015630 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016787 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | RefSeq:NP_196786.1 | ProteinID:OAO95623.1 |
| UniProt:P29514 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 |
| ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF106 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 |
| SUPFAM:SSF55307 | Symbol:TUB6 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf |
| InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI00000016E3 | SEG:seg |
Description
TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
Coordinates
chr5:-:3960938..3963624
Molecular Weight (calculated)
50588.7 Da
IEP (calculated)
4.437
GRAVY (calculated)
-0.380
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.