Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- vacuole 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G50010.1 | Thale cress | cytosol | 100.0 | 100.0 |
| CDY45043 | Canola | cytosol | 100.0 | 100.0 |
| CDY03583 | Canola | cytosol | 100.0 | 100.0 |
| Bra014232.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| AT4G14960.2 | Thale cress | cytosol | 99.56 | 99.56 |
| KRH35640 | Soybean | cytosol, nucleus | 96.44 | 96.66 |
| KRG91143 | Soybean | nucleus | 96.22 | 96.44 |
| Solyc04g077020.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 96.22 | 96.22 |
| Solyc08g006890.2.1 | Tomato | cytosol | 96.22 | 96.01 |
| PGSC0003DMT400022574 | Potato | cytosol | 96.0 | 96.0 |
| Solyc02g087880.2.1 | Tomato | cytosol, unclear | 95.56 | 95.56 |
| PGSC0003DMT400003336 | Potato | cytosol | 95.56 | 95.56 |
| PGSC0003DMT400030110 | Potato | cytosol | 95.56 | 95.34 |
| AT5G19770.1 | Thale cress | cytosol | 92.44 | 92.44 |
| AT5G19780.1 | Thale cress | cytosol | 92.44 | 92.44 |
| PGSC0003DMT400085117 | Potato | cytosol | 56.67 | 88.85 |
| AT1G64740.1 | Thale cress | cytosol | 88.44 | 88.44 |
| AT5G44340.1 | Thale cress | cytosol | 42.44 | 43.02 |
| AT4G20890.1 | Thale cress | cytosol | 42.44 | 43.02 |
| AT5G62690.1 | Thale cress | cytosol | 42.89 | 42.89 |
| AT5G62700.1 | Thale cress | cytosol | 42.89 | 42.89 |
| AT5G12250.1 | Thale cress | cytosol | 42.44 | 42.54 |
| AT5G23860.1 | Thale cress | cytosol | 42.0 | 42.09 |
| AT1G20010.1 | Thale cress | cytosol | 41.78 | 41.87 |
| AT2G29550.1 | Thale cress | cytosol | 41.78 | 41.87 |
| AT1G75780.1 | Thale cress | cytosol | 41.56 | 41.83 |
| AT5G05620.1 | Thale cress | cytosol | 31.33 | 29.75 |
| AT3G61650.1 | Thale cress | cytosol | 30.44 | 28.9 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.1 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:839405 | EntrezGene:841425 |
| UniProt:A0A178W5L2 | ProteinID:AAA32889.1 | ProteinID:AAA32890.1 | ProteinID:AAF40454.1 | ProteinID:AAF76449.1 | ProteinID:AEE27747.1 |
| ProteinID:AEE32507.1 | EMBL:AF410330 | EMBL:AK226954 | EMBL:AK317278 | ArrayExpress:AT1G04820 | EnsemblPlantsGene:AT1G04820 |
| RefSeq:AT1G04820 | TAIR:AT1G04820 | RefSeq:AT1G04820-TAIR-G | EnsemblPlants:AT1G04820.1 | TAIR:AT1G04820.1 | EMBL:AY058199 |
| EMBL:AY065117 | EMBL:AY142005 | EMBL:AY149922 | InterPro:Alpha_tubulin | UniProt:B9DGT7 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | RefSeq:NP_171974.1 |
| RefSeq:NP_175423.1 | ProteinID:OAP13790.1 | ProteinID:OAP15749.1 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000282 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0005020 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01162 | ScanProsite:PS00227 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF254 |
| UniProt:Q0WV25 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | Symbol:TUA4 |
| InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C |
| InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0000136975 | SEG:seg | : | : |
Description
TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
Coordinates
chr1:-:1356084..1358547
Molecular Weight (calculated)
49543.6 Da
IEP (calculated)
4.685
GRAVY (calculated)
-0.195
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.