Factsheet for PGSC0003DMT400085117

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012732	Potato	cytosol	55.4	63.35
CDY25017	Canola	cytosol	88.85	62.2
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	93.73	59.78
PGSC0003DMT400022574	Potato	cytosol	90.94	58.0
KRH35640	Soybean	cytosol, nucleus	89.55	57.24
PGSC0003DMT400003336	Potato	cytosol	89.55	57.11
KRG91143	Soybean	nucleus	89.2	57.02
PGSC0003DMT400030110	Potato	cytosol	89.55	56.98
AT4G14960.2	Thale cress	cytosol	89.2	56.89
CDY28123	Canola	cytosol	89.2	56.89
CDY50974	Canola	cytosol	89.2	56.89
AT1G04820.1	Thale cress	cytosol	88.85	56.67
Bra014232.1-P	Field mustard	cytosol	88.85	56.67
AT1G50010.1	Thale cress	cytosol	88.85	56.67
CDY45043	Canola	cytosol	88.85	56.67
Bra018825.1-P	Field mustard	cytosol	88.85	56.67
CDY03583	Canola	cytosol	88.85	56.67
CDY66630	Canola	cytosol	85.37	56.32
Bra039648.1-P	Field mustard	cytosol	88.15	56.22
PGSC0003DMT400078710	Potato	cytosol	88.15	56.1
CDY29334	Canola	cytosol	82.93	55.22
PGSC0003DMT400010906	Potato	cytosol	83.62	53.45
PGSC0003DMT400077781	Potato	cytosol	47.39	33.09
PGSC0003DMT400046148	Potato	cytosol	48.78	32.33
PGSC0003DMT400014466	Potato	cytosol	28.92	29.54
PGSC0003DMT400053750	Potato	cytosol	42.51	27.42
PGSC0003DMT400078206	Potato	cytosol	42.51	27.35
PGSC0003DMT400037093	Potato	cytosol	42.51	27.29
PGSC0003DMT400075425	Potato	cytosol	42.86	27.27
PGSC0003DMT400072466	Potato	cytosol	42.16	27.07
PGSC0003DMT400076938	Potato	cytosol	42.16	27.07
PGSC0003DMT400049212	Potato	cytosol	41.81	26.79
PGSC0003DMT400028800	Potato	cytosol	41.46	26.62
PGSC0003DMT400025739	Potato	cytosol	41.46	26.39
PGSC0003DMT400039263	Potato	cytosol	32.4	19.62

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Alpha_tubulin	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	UniProt:M1D8T0	PFAM:PF00091	PFAM:PF03953
EnsemblPlantsGene:PGSC0003DMG400034688	PGSC:PGSC0003DMG400034688	EnsemblPlants:PGSC0003DMT400085117	PRINTS:PR01161	PRINTS:PR01162	PANTHER:PTHR11588
PANTHER:PTHR11588:SF242	SMART:SM00864	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000296CE66	SEG:seg

Description

Alpha tubulin 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400034688]

Coordinates

chr2:+:21828000..21829301

Molecular Weight (calculated)

31818.0 Da

IEP (calculated)

4.027

GRAVY (calculated)

-0.168

Length

287 amino acids

Sequence
(BLAST)

001: MHAGELYCLE HGIQDDALMP GDKTVGGGDD AFNTFFSETG VEKHVPRAVF VDLEPTVIDE LADNCTGLQV FLVFNNVGSG TSSGLGSLLL EHLSVDYGKK
101: SKLGFTIYPS PQISTSVVEP YNSVLSTHSL LENTDVAILL DNEAIYDICR RSLDIERPTY TNLNRLISQV ISSLTASLRF DGALNVDVNE FQTNLVPYPR
201: IHFMLSSYAP VISIEKAYHE HLSVAEIIDS AFEPSSMMRA FVHWYVGEGM EEGEFSEARE DLAALEKDYE EVGAELEEGE DDDHEEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.