CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G14960.2	Thale cress	cytosol	99.77	95.56
CDY50974	Canola	cytosol	99.77	95.56
CDY45043	Canola	cytosol	99.77	95.56
CDY28123	Canola	cytosol	99.77	95.56
CDY03583	Canola	cytosol	99.77	95.56
CDY66630	Canola	cytosol	96.29	95.4
CDY25017	Canola	cytosol	90.72	95.37
Bra018825.1-P	Field mustard	cytosol	99.54	95.33
CDY35856	Canola	cytosol	32.25	93.29
KRH35640	Soybean	cytosol, nucleus	96.29	92.43
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	96.29	92.22
KRG91143	Soybean	nucleus	96.06	92.2
Solyc08g006890.2.1	Tomato	cytosol	96.29	92.02
PGSC0003DMT400022574	Potato	cytosol	96.06	92.0
Solyc02g087880.2.1	Tomato	cytosol, unclear	95.82	91.78
PGSC0003DMT400003336	Potato	cytosol	95.82	91.78
PGSC0003DMT400030110	Potato	cytosol	95.82	91.57
CDY42295	Canola	cytosol	92.81	88.89
CDY42294	Canola	cytosol	92.81	88.89
CDX92501	Canola	cytosol	92.58	88.67
CDX92502	Canola	cytosol	92.58	88.67
CDY44941	Canola	cytosol	92.34	88.44
CDX88875	Canola	cytosol	92.34	88.44
CDY44942	Canola	cytosol	92.34	88.44
CDX70890	Canola	cytosol	92.34	88.44
PGSC0003DMT400085117	Potato	cytosol	55.22	82.93
CDY46272	Canola	cytosol	49.65	74.05
CDY05559	Canola	mitochondrion	65.43	56.06
CDY67078	Canola	cytosol	38.75	42.39
CDY21784	Canola	cytosol	41.07	41.45
CDX99087	Canola	cytosol	41.07	41.45
CDX88051	Canola	cytosol	40.37	40.85
CDY60599	Canola	cytosol	41.76	40.45
CDX96965	Canola	cytosol	41.53	40.22
CDY14924	Canola	cytosol	41.53	40.13
CDY31638	Canola	cytosol	41.3	40.09
CDY51360	Canola	cytosol	41.76	40.09
CDY45452	Canola	cytosol	41.76	40.09
CDX97877	Canola	cytosol	41.76	40.09
CDX86102	Canola	plasma membrane	41.76	40.0
CDY69221	Canola	cytosol	41.3	40.0
CDY38073	Canola	cytosol	41.76	40.0
CDY13108	Canola	cytosol	41.3	40.0
CDX84345	Canola	cytosol	41.76	40.0
CDY00319	Canola	cytosol	41.76	40.0
CDX79013	Canola	cytosol	41.3	39.91
CDY31428	Canola	cytosol	41.3	39.91
CDX82788	Canola	cytosol	41.3	39.91
CDX76444	Canola	cytosol	41.3	39.91
CDY53366	Canola	cytosol	41.53	39.87
CDY49002	Canola	cytosol	41.07	39.78
CDX84283	Canola	cytosol	41.07	39.69
CDX87664	Canola	cytosol	41.07	39.6
CDX73198	Canola	cytosol	41.07	39.6
CDX98679	Canola	cytosol	40.84	39.46
CDX94014	Canola	cytosol	40.84	39.46
CDX80390	Canola	cytosol	41.07	39.42
CDX69693	Canola	cytosol	41.3	38.61
CDX97180	Canola	cytosol	41.3	37.01
CDX68422	Canola	cytosol	22.97	34.49
CDX71723	Canola	cytosol	30.16	27.48
CDY11370	Canola	cytosol	30.16	27.48

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	GO:A0A078GVZ3	UniProt:A0A078GVZ3
InterPro:Alpha_tubulin	EnsemblPlants:CDY29334	ProteinID:CDY29334	ProteinID:CDY29334.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00042896001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0004EF0A51	SEG:seg	:	:	:	:

Description

BnaA05g16010DTubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A078GVZ3]

Coordinates

chrLK032235:-:210613..212714

Molecular Weight (calculated)

47487.2 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.203

Length

431 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGVL STHSLLEHTD VSILLDNEAI YDICRRSLNI
201: ERPTYTNLNR LVSQVISSLT ASLRFDGALN VDVTEFQTNL VPYPRIHFML SSYAPVISAE KAFHEQLSVA EITNSAFEPA SMMAKCDPRH GKYMACCLMY
301: RGDVVPKDVN AAVGTIKTKR TIQFVDWCPT GFKCGINYQP PTVVPGGDLA KVQRAVCMIS NSTSVAEVFS RIDHKFDLMY AKRAFVHWYV GEGMEEGEFS
401: EAREDLAALE KDYEEVGAEG GDDEDDEGEE Y

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.