CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42295	Canola	cytosol	100.0	100.0
AT5G19780.1	Thale cress	cytosol	99.78	99.78
AT5G19770.1	Thale cress	cytosol	99.78	99.78
CDX88875	Canola	cytosol	99.56	99.56
CDX70890	Canola	cytosol	99.56	99.56
CDY44941	Canola	cytosol	99.56	99.56
CDY44942	Canola	cytosol	99.56	99.56
CDX92501	Canola	cytosol	99.33	99.33
CDX92502	Canola	cytosol	99.33	99.33
CDY35856	Canola	cytosol	32.89	99.33
KRH58942	Soybean	nucleus	97.56	97.77
KRH42841	Soybean	cytosol, nucleus	97.33	97.33
HORVU2Hr1G037560.2	Barley	cytosol	78.67	96.99
CDY66630	Canola	cytosol	90.44	93.56
TraesCS4B01G243100.1	Wheat	cytosol	92.67	92.87
TraesCS4D01G242700.1	Wheat	cytosol	92.67	92.87
CDY29334	Canola	cytosol	88.89	92.81
CDY03583	Canola	cytosol	92.67	92.67
CDY45043	Canola	cytosol	92.67	92.67
TraesCS4A01G065700.1	Wheat	cytosol	92.44	92.65
EER92631	Sorghum	cytosol	92.22	92.63
CDY50974	Canola	cytosol	92.44	92.44
CDY28123	Canola	cytosol	92.44	92.44
CDY25017	Canola	cytosol	84.22	92.44
HORVU4Hr1G067370.1	Barley	cytosol	92.22	92.43
Zm00001d048065_P002	Maize	cytosol, mitochondrion	91.78	92.19
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	91.56	91.76
VIT_08s0007g07260.t01	Wine grape	cytosol	89.33	90.13
CDY46272	Canola	cytosol	45.56	70.93
CDY05559	Canola	mitochondrion	62.22	55.67
CDY31638	Canola	cytosol	42.44	43.02
CDX96965	Canola	cytosol	42.44	42.92
CDY14924	Canola	cytosol	42.44	42.83
CDY51360	Canola	cytosol	42.67	42.76
CDX97877	Canola	cytosol	42.67	42.76
CDY60599	Canola	cytosol	42.22	42.7
CDY13108	Canola	cytosol	42.22	42.7
CDY67078	Canola	cytosol	37.33	42.64
CDX84283	Canola	cytosol	42.22	42.6
CDY53366	Canola	cytosol	42.44	42.54
CDY45452	Canola	cytosol	42.44	42.54
CDY00319	Canola	cytosol	42.44	42.44
CDX86102	Canola	plasma membrane	42.44	42.44
CDY38073	Canola	cytosol	42.44	42.44
CDX84345	Canola	cytosol	42.44	42.44
CDX73198	Canola	cytosol	42.0	42.28
CDX87664	Canola	cytosol	42.0	42.28
CDY69221	Canola	cytosol	41.78	42.25
CDX76444	Canola	cytosol	41.78	42.15
CDX79013	Canola	cytosol	41.78	42.15
CDX94014	Canola	cytosol	41.78	42.15
CDX82788	Canola	cytosol	41.78	42.15
CDY31428	Canola	cytosol	41.78	42.15
CDX80390	Canola	cytosol	42.0	42.09
CDY49002	Canola	cytosol	41.56	42.02
CDX98679	Canola	cytosol	41.33	41.7
CDX69693	Canola	cytosol	42.67	41.65
CDX99087	Canola	cytosol	39.33	41.45
CDY21784	Canola	cytosol	39.33	41.45
CDX88051	Canola	cytosol	38.89	41.08
CDX97180	Canola	cytosol	42.67	39.92
CDX68422	Canola	cytosol	24.22	37.98
CDY11370	Canola	cytosol	30.67	29.18
CDX71723	Canola	cytosol	30.67	29.18
Os03t0780800-01	Rice	cytosol	0.67	1.27

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078HY73	UniProt:A0A078HY73
InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	EnsemblPlants:CDY42294	ProteinID:CDY42294	ProteinID:CDY42294.1	ProteinID:CDY42295.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00074534001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EC25DA	SEG:seg	:	:

Description

BnaC02g09000DTubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A078HY73]

Coordinates

chrLK032520:-:173937..175706

Molecular Weight (calculated)

49670.9 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.154

Length

450 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEEY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.