Factsheet for HORVU4Hr1G067370.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G065700.1	Wheat	cytosol	99.55	99.55
TraesCS4B01G243100.1	Wheat	cytosol	99.33	99.33
TraesCS4D01G242700.1	Wheat	cytosol	99.33	99.33
EER92631	Sorghum	cytosol	96.44	96.65
Zm00001d048065_P002	Maize	cytosol, mitochondrion	95.99	96.21
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	95.55	95.55
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.31	92.55
CDY42295	Canola	cytosol	92.43	92.22
CDY42294	Canola	cytosol	92.43	92.22
HORVU2Hr1G037560.2	Barley	cytosol	74.83	92.05
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	92.43	92.02
CDX92502	Canola	cytosol	92.2	92.0
CDX92501	Canola	cytosol	92.2	92.0
CDX88875	Canola	cytosol	92.2	92.0
CDX70890	Canola	cytosol	92.2	92.0
Bra020062.1-P	Field mustard	cytosol	92.2	92.0
Bra002261.1-P	Field mustard	cytosol	92.2	92.0
CDY44941	Canola	cytosol	91.98	91.78
CDY44942	Canola	cytosol	91.98	91.78
Bra006517.1-P	Field mustard	cytosol	91.54	91.33
Bra020061.1-P	Field mustard	cytosol	90.87	90.67
Bra002260.1-P	Field mustard	cytosol	82.41	90.24
AT1G64740.1	Thale cress	cytosol	89.75	89.56
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	88.64	88.25
HORVU1Hr1G081280.1	Barley	cytosol	88.42	88.03
HORVU2Hr1G037550.2	Barley	cytosol	86.19	85.62
VIT_08s0007g07260.t01	Wine grape	cytosol	84.63	85.2
HORVU2Hr1G037570.3	Barley	cytosol	81.07	81.98
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	87.97	79.32
HORVU0Hr1G026030.2	Barley	cytosol	41.2	41.39
HORVU1Hr1G068170.1	Barley	cytosol	41.2	41.39
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	40.98	41.26
HORVU6Hr1G027620.1	Barley	plasma membrane	40.31	40.58
HORVU3Hr1G078940.1	Barley	mitochondrion	40.76	36.38
HORVU4Hr1G002530.2	Barley	cytosol	39.2	35.77
HORVU5Hr1G100900.2	Barley	cytosol	40.31	35.77
HORVU1Hr1G064870.3	Barley	mitochondrion	40.53	34.67
HORVU1Hr1G023030.2	Barley	cytosol	31.4	30.06
HORVU4Hr1G087740.1	Barley	cytosol	31.4	30.06

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:AK354942	EMBL:AK357138
InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	ncoils:Coil	UniProt:F2CTJ0	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856
GO:GO:0005874	GO:GO:0005886	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G067370	EnsemblPlants:HORVU4Hr1G067370.1	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF189	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002004842	SEG:seg

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:F2CTJ0]

Coordinates

chrchr4H:+:558923727..558926890

Molecular Weight (calculated)

49932.1 Da

IEP (calculated)

4.835

GRAVY (calculated)

-0.183

Length

449 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGLMPSDT SVGVAKDAFN TFFSETGSGK HVPRALFVDL EPTVIDEVRT GAYRQLFHPE QLISHNEDAA
101: NNFARGHYTV GREVVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGRKSKLGFT IYPSPQISTA VVEPYNSVLS THSLIEHTDV
201: VVLLDNEAIY DICKRSLDIE RPTYTNLNRL ISQVISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPIISAEK AFHEQHSVPE ITNTVFEPSS
301: VMAKCDPRHG KYMACCLMYR GDVVPKDVNS AVHSIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VRRAVCMISN NTAVAEVFSR IDRKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGE DDDDEVDEY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.