Factsheet for HORVU2Hr1G037560.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70890	Canola	cytosol	97.26	78.89
CDX88875	Canola	cytosol	97.26	78.89
CDY42294	Canola	cytosol	96.99	78.67
CDY42295	Canola	cytosol	96.99	78.67
Bra002261.1-P	Field mustard	cytosol	96.71	78.44
Bra020062.1-P	Field mustard	cytosol	96.71	78.44
CDX92501	Canola	cytosol	96.71	78.44
CDX92502	Canola	cytosol	96.71	78.44
CDY44941	Canola	cytosol	96.71	78.44
CDY44942	Canola	cytosol	96.71	78.44
Bra020061.1-P	Field mustard	cytosol	96.44	78.22
Bra006517.1-P	Field mustard	cytosol	96.16	78.0
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	93.42	75.61
Bra002260.1-P	Field mustard	cytosol	84.38	75.12
HORVU1Hr1G081280.1	Barley	cytosol	92.6	74.94
HORVU4Hr1G067370.1	Barley	cytosol	92.05	74.83
AT1G64740.1	Thale cress	cytosol	91.51	74.22
VIT_08s0007g07260.t01	Wine grape	cytosol	90.41	73.99
HORVU2Hr1G037550.2	Barley	cytosol	91.51	73.89
HORVU2Hr1G037570.3	Barley	cytosol	85.48	70.27
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	92.05	67.47
HORVU6Hr1G027620.1	Barley	plasma membrane	43.01	35.2
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	42.74	34.98
HORVU1Hr1G068170.1	Barley	cytosol	42.74	34.9
HORVU0Hr1G026030.2	Barley	cytosol	42.74	34.9
HORVU3Hr1G078940.1	Barley	mitochondrion	43.01	31.21
HORVU5Hr1G100900.2	Barley	cytosol	42.19	30.43
HORVU4Hr1G002530.2	Barley	cytosol	40.82	30.28
HORVU1Hr1G064870.3	Barley	mitochondrion	43.01	29.9
HORVU1Hr1G023030.2	Barley	cytosol	32.6	25.37
HORVU4Hr1G087740.1	Barley	cytosol	31.23	24.31
Os03t0780800-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A287HQV2	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	EnsemblPlantsGene:HORVU2Hr1G037560	EnsemblPlants:HORVU2Hr1G037560.2	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000B46B01E	SEG:seg	:	:	:	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A287HQV2]

Coordinates

chrchr2H:-:172696110..172698749

Molecular Weight (calculated)

40104.0 Da

IEP (calculated)

6.123

GRAVY (calculated)

-0.051

Length

365 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNAC WELYCLEHGI NQDGTMPSDT TVGVAHDAFN TFFSETGAGK HVPRAIFVDL EPTVIDEVRT GAYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVPE ITNAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP SVVPG

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.