Factsheet for HORVU4Hr1G087740.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.56	100.0
CDX68422	Canola	cytosol	57.78	94.43
HORVU6Hr1G027620.1	Barley	plasma membrane	69.3	72.87
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	68.66	72.2
HORVU0Hr1G026030.2	Barley	cytosol	68.66	72.04
HORVU1Hr1G068170.1	Barley	cytosol	68.66	72.04
VIT_02s0025g03540.t01	Wine grape	cytosol	66.95	70.72
KRH41169	Soybean	cytosol	66.74	70.34
KRH59870	Soybean	endoplasmic reticulum	66.1	69.51
HORVU4Hr1G002530.2	Barley	cytosol	69.94	66.67
HORVU3Hr1G078940.1	Barley	mitochondrion	70.58	65.81
HORVU5Hr1G100900.2	Barley	cytosol	68.87	63.83
HORVU1Hr1G064870.3	Barley	mitochondrion	69.94	62.48
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	31.77	33.04
HORVU1Hr1G081280.1	Barley	cytosol	31.56	32.82
HORVU2Hr1G037570.3	Barley	cytosol	30.7	32.43
HORVU2Hr1G037550.2	Barley	cytosol	30.49	31.64
HORVU4Hr1G067370.1	Barley	cytosol	30.06	31.4
HORVU2Hr1G037560.2	Barley	cytosol	24.31	31.23
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	31.98	30.12
HORVU1Hr1G023030.2	Barley	cytosol	24.95	24.95

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A287Q0W7	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G087740	EnsemblPlants:HORVU4Hr1G087740.1	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
PANTHER:PTHR11588	PANTHER:PTHR11588:SF256	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000B472FE7	SEG:seg	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A287Q0W7]

Coordinates

chrchr4H:+:638107548..638109556

Molecular Weight (calculated)

53714.4 Da

IEP (calculated)

10.386

GRAVY (calculated)

-0.747

Length

469 amino acids

Sequence
(BLAST)

001: LHSTPLHSPP HRRRRRTSSD EDEGDPAHPG RAVREPDRGQ VLGGGVRGAR DRPHRPLRRR HRPAARARQR LLQRGLLRPL RAPRRPHGPR ARHHGLRPLR
101: PLRRHLPPRQ LRLRPVRRRQ QLGQGTLHRG RRAHRLRPRR CPQGGRELRL PPRGFQVCHS LGGGTGSGMG TLLISKIREE YPDRMMLTFS VFPSPKVSDT
201: VVEPYNATLS VHQLVENADE CMVLDNEALY DICFRTLKLT TPSFGDLNHL ISATMSGVTC CLRFPGQLNS DLRKLAVNLI PFPRLHFFMV GFAPLTSRGS
301: QQYRALTVPE LTQQMWDAKN MMCAADPRHG RYLTASAMFR GKMSTKEVDE QMLNVQNKNS SYFVEWIPNN VKSTVCDIPP TGLKMASTFI GNSTSIQEMF
401: RRVSEQFTAM FRRKAFLHWY TGEGMDEMEF TEAESNMNDL VSEYQQYQDA TADEEGEYED EEDDADLQD

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.