Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G007960.1 | |
| HORVU6Hr1G090650.2 | |
| HORVU7Hr1G029120.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20890.1 | HORVU5Hr1G007960.1 | AT2G30410.1 | 20638386 |
| AT4G20890.1 | HORVU6Hr1G090650.2 | AT2G30410.1 | 20638386 |
| AT5G44340.1 | HORVU7Hr1G029120.1 | AT3G50960.1 | 18390592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G130500.2 | Wheat | golgi | 98.88 | 99.1 |
| TraesCS6B01G169300.1 | Wheat | cytosol | 98.43 | 98.87 |
| Zm00001d015348_P002 | Maize | plastid | 97.53 | 97.97 |
| EES04582 | Sorghum | cytosol | 97.53 | 97.53 |
| Os06t0671900-01 | Rice | plasma membrane | 97.09 | 97.09 |
| HORVU7Hr1G107100.2 | Barley | cytosol, nucleus | 96.86 | 96.86 |
| CDY31638 | Canola | cytosol | 96.19 | 96.62 |
| KRH58404 | Soybean | nucleus | 95.74 | 96.61 |
| GSMUA_Achr11P... | Banana | cytosol | 75.78 | 96.57 |
| KRH36829 | Soybean | nucleus | 96.41 | 96.41 |
| KRH11812 | Soybean | nucleus | 96.41 | 96.41 |
| GSMUA_Achr8P07060_001 | Banana | cytosol | 84.08 | 96.4 |
| CDX84283 | Canola | cytosol | 96.19 | 96.19 |
| KRH42279 | Soybean | cytosol | 95.52 | 96.16 |
| VIT_10s0003g05320.t01 | Wine grape | cytosol | 95.74 | 95.96 |
| GSMUA_Achr2P01410_001 | Banana | cytosol | 83.86 | 95.9 |
| GSMUA_Achr5P26680_001 | Banana | cytosol | 83.41 | 95.88 |
| GSMUA_Achr3P23490_001 | Banana | cytosol | 79.82 | 95.44 |
| GSMUA_Achr5P00290_001 | Banana | cytosol | 82.96 | 94.15 |
| HORVU1Hr1G068170.1 | Barley | cytosol | 93.95 | 93.74 |
| HORVU0Hr1G026030.2 | Barley | cytosol | 93.95 | 93.74 |
| CDX94014 | Canola | cytosol | 93.72 | 93.72 |
| AT4G20890.1 | Thale cress | cytosol | 93.27 | 93.69 |
| Bra020912.1-P | Field mustard | cytosol | 93.5 | 93.5 |
| CDX98679 | Canola | cytosol | 93.5 | 93.5 |
| CDY31428 | Canola | cytosol | 93.27 | 93.27 |
| CDX76444 | Canola | cytosol | 93.27 | 93.27 |
| Bra027544.1-P | Field mustard | cytosol | 93.05 | 93.26 |
| CDX96965 | Canola | cytosol | 93.05 | 93.26 |
| AT5G44340.1 | Thale cress | cytosol | 92.83 | 93.24 |
| CDY14924 | Canola | cytosol | 93.05 | 93.05 |
| Bra039506.1-P | Field mustard | cytosol | 93.05 | 93.05 |
| CDY13108 | Canola | cytosol | 92.83 | 93.03 |
| Bra038795.1-P | Field mustard | cytosol | 92.83 | 93.03 |
| CDY60599 | Canola | cytosol | 92.83 | 93.03 |
| CDX82788 | Canola | cytosol | 92.83 | 92.83 |
| CDX79013 | Canola | cytosol | 92.83 | 92.83 |
| CDY69221 | Canola | cytosol | 92.15 | 92.36 |
| CDY49002 | Canola | cytosol | 91.93 | 92.13 |
| Bra033737.1-P | Field mustard | cytosol | 91.93 | 92.13 |
| Bra013481.1-P | Field mustard | cytosol | 91.7 | 91.7 |
| Bra005395.1-P | Field mustard | cytosol | 80.49 | 89.08 |
| GSMUA_Achr6P19990_001 | Banana | cytosol | 78.25 | 84.3 |
| HORVU5Hr1G100900.2 | Barley | cytosol | 95.52 | 84.19 |
| HORVU3Hr1G078940.1 | Barley | mitochondrion | 94.62 | 83.9 |
| HORVU4Hr1G002530.2 | Barley | cytosol | 91.26 | 82.72 |
| HORVU1Hr1G064870.3 | Barley | mitochondrion | 94.17 | 80.0 |
| HORVU4Hr1G087740.1 | Barley | cytosol | 72.87 | 69.3 |
| HORVU2Hr1G037560.2 | Barley | cytosol | 35.2 | 43.01 |
| HORVU4Hr1G009520.1 | Barley | cytosol, plasma membrane | 42.38 | 41.91 |
| HORVU1Hr1G081280.1 | Barley | cytosol | 41.93 | 41.46 |
| HORVU4Hr1G067370.1 | Barley | cytosol | 40.58 | 40.31 |
| HORVU2Hr1G037550.2 | Barley | cytosol | 39.01 | 38.5 |
| HORVU5Hr1G098960.2 | Barley | cytosol, mitochondrion | 42.38 | 37.95 |
| HORVU2Hr1G037570.3 | Barley | cytosol | 37.22 | 37.39 |
| HORVU1Hr1G023030.2 | Barley | cytosol | 35.43 | 33.69 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | UniProt:A5CFY5 | EMBL:AM502850 |
| InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 |
| GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | EnsemblPlantsGene:HORVU6Hr1G027620 |
| EnsemblPlants:HORVU6Hr1G027620.1 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | PFAM:PF00091 | PFAM:PF03953 |
| PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF245 |
| SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | InterPro:Tub_FtsZ_C | InterPro:Tubulin |
| InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase |
| UniParc:UPI000151DD00 | SEG:seg | : | : | : | : |
Description
Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A5CFY5]
Coordinates
chrchr6H:+:109117475..109121246
Molecular Weight (calculated)
50048.0 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.362
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DQTGKYAGDS DLQLERINVY YNEASGGRFV PRAVLMDLEP GTMDSLRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDIPPTG LSMSSTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEEEYEEEE DDEVAA
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDIPPTG LSMSSTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEEEYEEEE DDEVAA
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
Arabidopsis Description
TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.