Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G100900.2 | |
| HORVU6Hr1G027620.1 | |
| HORVU7Hr1G107100.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30410.1 | HORVU5Hr1G100900.2 | AT4G20890.1 | 20638386 |
| AT2G30410.1 | HORVU6Hr1G027620.1 | AT4G20890.1 | 20638386 |
| AT2G30410.1 | HORVU7Hr1G107100.2 | AT4G20890.1 | 20638386 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G038700.1 | Wheat | cytosol | 68.48 | 99.12 |
| TraesCS5B01G028900.1 | Wheat | cytosol | 68.48 | 99.12 |
| TraesCS5A01G030500.1 | Wheat | cytosol | 68.48 | 99.12 |
| EES06012 | Sorghum | cytosol | 62.42 | 91.96 |
| Os02t0816500-01 | Rice | cytosol | 47.27 | 86.67 |
| GSMUA_Achr1P20090_001 | Banana | cytosol, mitochondrion | 52.12 | 76.79 |
| KRH22160 | Soybean | cytosol, mitochondrion | 51.52 | 75.22 |
| KRH27177 | Soybean | cytosol | 51.52 | 74.56 |
| HORVU6Hr1G090650.2 | Barley | cytosol | 27.88 | 73.02 |
| AT2G30410.1 | Thale cress | cytosol, mitochondrion | 49.7 | 72.57 |
| PGSC0003DMT400046252 | Potato | cytosol | 49.7 | 72.57 |
| VIT_15s0021g01180.t01 | Wine grape | cytosol | 50.3 | 70.94 |
| Bra018315.1-P | Field mustard | cytosol | 47.27 | 70.91 |
| CDY10736 | Canola | cytosol | 47.27 | 70.91 |
| CDY02064 | Canola | cytosol | 46.67 | 70.0 |
| Zm00001d018478_P001 | Maize | extracellular | 61.82 | 69.86 |
| Solyc01g068400.2.1 | Tomato | cytosol | 30.3 | 65.79 |
| Bra022798.1-P | Field mustard | cytosol | 28.48 | 64.38 |
Protein Annotations
| Gene3D:1.20.58.90 | MapMan:20.3.3.1.1 | UniProt:A0A287QAB4 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007021 | GO:GO:0007023 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0048487 | EnsemblPlantsGene:HORVU5Hr1G007960 | EnsemblPlants:HORVU5Hr1G007960.1 | PFAM:PD010430 | PFAM:PF02970 | PANTHER:PTHR21500 |
| SUPFAM:SSF46988 | InterPro:TBCA | InterPro:TBCA_sf | UniParc:UPI000B45FE8C | SEG:seg | : |
Description
Tubulin-specific chaperone A [Source:UniProtKB/TrEMBL;Acc:A0A287QAB4]
Coordinates
chrchr5H:-:17074938..17077432
Molecular Weight (calculated)
18153.6 Da
IEP (calculated)
8.058
GRAVY (calculated)
-0.801
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: ISGHPTPLPG RAAAAAADPY RNSRTATAVK PPRQAPPRRP RCNQGKIPHL GMATLRNLKI KTSTCKRIVK ELRSYEKEVE KEAAKTADMK EKGADTYDLK
101: QQENVLAESR MMVPDCHKRL EAALTDLKAT LAELKESNEQ GTEIGEAEAT ITEVEAVYTP TEAED
101: QQENVLAESR MMVPDCHKRL EAALTDLKAT LAELKESNEQ GTEIGEAEAT ITEVEAVYTP TEAED
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
101: VADVEKQFPT EDA
Arabidopsis Description
TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.