Factsheet for HORVU7Hr1G107100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G007960.1
HORVU6Hr1G090650.2
HORVU7Hr1G029120.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	HORVU5Hr1G007960.1	AT2G30410.1	20638386
AT4G20890.1	HORVU6Hr1G090650.2	AT2G30410.1	20638386
AT5G44340.1	HORVU7Hr1G029120.1	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G454200.1	Wheat	cytosol	99.78	99.78
TraesCS7A01G466600.1	Wheat	golgi	99.78	99.78
HORVU6Hr1G027620.1	Barley	plasma membrane	96.86	96.86
Os06t0671900-01	Rice	plasma membrane	96.41	96.41
KRH42279	Soybean	cytosol	95.74	96.39
EES04582	Sorghum	cytosol	96.19	96.19
KRH58404	Soybean	nucleus	95.29	96.15
Zm00001d015348_P002	Maize	plastid	95.07	95.5
GSMUA_Achr8P07060_001	Banana	cytosol	83.18	95.37
KRH11812	Soybean	nucleus	95.29	95.29
GSMUA_Achr11P...	Banana	cytosol	74.66	95.14
KRH36829	Soybean	nucleus	95.07	95.07
CDX84283	Canola	cytosol	95.07	95.07
CDY31638	Canola	cytosol	94.62	95.05
GSMUA_Achr2P01410_001	Banana	cytosol	82.96	94.87
VIT_10s0003g05320.t01	Wine grape	cytosol	94.62	94.83
GSMUA_Achr5P26680_001	Banana	cytosol	82.29	94.59
GSMUA_Achr3P23490_001	Banana	cytosol	78.92	94.37
CDX94014	Canola	cytosol	94.17	94.17
Bra020912.1-P	Field mustard	cytosol	93.95	93.95
CDX98679	Canola	cytosol	93.95	93.95
AT4G20890.1	Thale cress	cytosol	93.5	93.92
CDY31428	Canola	cytosol	93.72	93.72
CDX76444	Canola	cytosol	93.72	93.72
GSMUA_Achr5P00290_001	Banana	cytosol	82.51	93.64
Bra038795.1-P	Field mustard	cytosol	93.27	93.48
HORVU0Hr1G026030.2	Barley	cytosol	93.5	93.29
HORVU1Hr1G068170.1	Barley	cytosol	93.5	93.29
CDX82788	Canola	cytosol	93.27	93.27
CDX79013	Canola	cytosol	93.27	93.27
CDY60599	Canola	cytosol	93.05	93.26
CDX96965	Canola	cytosol	92.83	93.03
Bra027544.1-P	Field mustard	cytosol	92.83	93.03
AT5G44340.1	Thale cress	cytosol	92.6	93.02
CDY14924	Canola	cytosol	92.83	92.83
Bra039506.1-P	Field mustard	cytosol	92.83	92.83
CDY13108	Canola	cytosol	92.6	92.81
CDY69221	Canola	cytosol	92.6	92.81
CDY49002	Canola	cytosol	92.38	92.58
Bra033737.1-P	Field mustard	cytosol	92.38	92.58
Bra013481.1-P	Field mustard	cytosol	92.15	92.15
Bra005395.1-P	Field mustard	cytosol	79.6	88.09
HORVU5Hr1G100900.2	Barley	cytosol	94.62	83.4
GSMUA_Achr6P19990_001	Banana	cytosol	77.35	83.33
HORVU3Hr1G078940.1	Barley	mitochondrion	93.72	83.1
HORVU4Hr1G002530.2	Barley	cytosol	91.48	82.93
HORVU1Hr1G064870.3	Barley	mitochondrion	93.05	79.05
HORVU4Hr1G087740.1	Barley	cytosol	72.2	68.66
HORVU2Hr1G037560.2	Barley	cytosol	34.98	42.74
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	42.15	41.69
HORVU1Hr1G081280.1	Barley	cytosol	41.7	41.24
HORVU4Hr1G067370.1	Barley	cytosol	41.26	40.98
HORVU2Hr1G037550.2	Barley	cytosol	38.79	38.27
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	41.93	37.55
HORVU2Hr1G037570.3	Barley	cytosol	37.0	37.16
HORVU1Hr1G023030.2	Barley	cytosol	35.2	33.48

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A5CFY6	EMBL:AK375223
EMBL:AM502851	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
EnsemblPlantsGene:HORVU7Hr1G107100	EnsemblPlants:HORVU7Hr1G107100.2	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF245	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000151DD01	SEG:seg	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A5CFY6]

Coordinates

chrchr7H:-:621839515..621842579

Molecular Weight (calculated)

50241.4 Da

IEP (calculated)

4.430

GRAVY (calculated)

-0.382

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DQTGKYAGDS DLQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSLRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQM YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDIPPTG LKMSSTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV EEEEDYEDEQ EDEEAV

Best Arabidopsis Sequence Match ( AT4G20890.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DQTGQSCGDT DLQLERINVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA

Arabidopsis Description

TUBB9Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UU99]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.