CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH17436
KRH22160
KRH27177
KRH69862

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	KRH22160	AT2G30410.1	20638386
AT4G20890.1	KRH27177	AT2G30410.1	20638386
AT5G44340.1	KRH17436	AT3G50960.1	18390592
AT5G44340.1	KRH69862	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58404	Soybean	nucleus	99.1	99.32
KRH11812	Soybean	nucleus	98.19	97.53
Zm00001d036626_P001	Maize	cytosol	49.89	97.36
KRH36829	Soybean	nucleus	97.97	97.31
GSMUA_Achr11P...	Banana	cytosol	76.52	96.86
VIT_10s0003g05320.t01	Wine grape	cytosol	97.29	96.85
EES04582	Sorghum	cytosol	97.29	96.64
EER90205	Sorghum	cytosol	97.29	96.64
Os02t0167300-01	Rice	plasma membrane	97.07	96.2
Os06t0671900-01	Rice	plasma membrane	96.84	96.19
TraesCS6D01G130500.2	Wheat	golgi	96.61	96.18
TraesCS6B01G169300.1	Wheat	cytosol	96.39	96.17
Os03t0780600-01	Rice	plastid	96.39	96.17
GSMUA_Achr5P26680_001	Banana	cytosol	84.2	96.13
Zm00001d046996_P001	Maize	cytosol	50.11	96.1
EER93354	Sorghum	cytosol	96.39	95.96
CDY31638	Canola	cytosol	96.16	95.95
GSMUA_Achr2P01410_001	Banana	cytosol	84.42	95.9
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	96.39	95.74
CDX84283	Canola	cytosol	96.39	95.74
TraesCS7A01G466600.1	Wheat	golgi	96.39	95.74
TraesCS7D01G454200.1	Wheat	cytosol	96.39	95.74
HORVU6Hr1G027620.1	Barley	plasma membrane	96.16	95.52
GSMUA_Achr3P23490_001	Banana	cytosol	80.36	95.44
GSMUA_Achr8P07060_001	Banana	cytosol	83.52	95.12
Zm00001d013139_P001	Maize	cytosol	62.75	94.88
Zm00001d015348_P002	Maize	plastid	95.03	94.82
TraesCS5A01G416400.1	Wheat	cytosol	95.03	94.82
Zm00001d034022_P001	Maize	cytosol	55.98	94.66
GSMUA_Achr5P00290_001	Banana	cytosol	83.97	94.66
TraesCS5D01G424100.1	Wheat	cytosol	95.03	94.61
TraesCS5B01G418700.1	Wheat	golgi	95.03	94.61
CDX94014	Canola	cytosol	94.58	93.95
AT5G44340.1	Thale cress	cytosol	94.13	93.92
KRH75786	Soybean	nucleus	95.03	93.76
KRH65977	Soybean	nucleus	95.03	93.76
CDX98679	Canola	cytosol	94.36	93.72
Bra020912.1-P	Field mustard	cytosol	94.36	93.72
AT4G20890.1	Thale cress	cytosol	93.91	93.69
CDY31428	Canola	cytosol	94.13	93.5
CDX76444	Canola	cytosol	94.13	93.5
Bra038795.1-P	Field mustard	cytosol	93.68	93.26
CDY60599	Canola	cytosol	93.68	93.26
KRH05958	Soybean	nucleus	94.36	93.1
KRG91525	Soybean	nucleus	94.13	93.08
KRH51701	Soybean	nucleus	94.13	93.08
KRH35301	Soybean	nucleus	94.13	93.08
CDX82788	Canola	cytosol	93.68	93.05
CDX79013	Canola	cytosol	93.68	93.05
CDX96965	Canola	cytosol	93.45	93.03
Bra027544.1-P	Field mustard	cytosol	93.45	93.03
CDY69221	Canola	cytosol	93.45	93.03
CDY14924	Canola	cytosol	93.45	92.83
Bra039506.1-P	Field mustard	cytosol	93.45	92.83
CDY13108	Canola	cytosol	93.23	92.81
CDY49002	Canola	cytosol	93.23	92.81
Bra033737.1-P	Field mustard	cytosol	93.23	92.81
KRG95065	Soybean	plasma membrane	93.91	92.44
KRH61035	Soybean	nucleus	93.68	92.43
KRH66728	Soybean	nucleus	93.23	91.98
Bra013481.1-P	Field mustard	cytosol	92.55	91.93
KRH17435	Soybean	nucleus	94.81	91.9
GSMUA_Achr6P04600_001	Banana	cytosol	87.36	91.49
KRH41834	Soybean	cytosol	91.42	91.01
KRH41169	Soybean	cytosol	91.42	91.01
KRH60536	Soybean	endoplasmic reticulum	91.2	90.79
KRH59870	Soybean	endoplasmic reticulum	90.97	90.36
Bra005395.1-P	Field mustard	cytosol	80.59	88.59
GSMUA_Achr6P19990_001	Banana	cytosol	79.46	85.02
HORVU5Hr1G100900.2	Barley	cytosol	95.03	83.2
KRH04356	Soybean	cytosol	26.41	46.61
KRH58942	Soybean	nucleus	42.44	41.87
KRH35640	Soybean	cytosol, nucleus	42.44	41.87
KRH42841	Soybean	cytosol, nucleus	42.44	41.78
KRG91143	Soybean	nucleus	42.21	41.65
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.53	41.53
KRH77187	Soybean	endoplasmic reticulum	42.21	41.46
KRH28301	Soybean	cytosol, endoplasmic reticulum	41.99	41.24
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	41.99	41.24
KRH58181	Soybean	nucleus	41.76	41.11
KRH52851	Soybean	cytosol, nucleus	41.76	40.93
KRH62139	Soybean	nucleus	41.76	40.93
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	40.86	40.77
KRH04357	Soybean	cytosol	13.32	34.71
KRG97131	Soybean	cytosol	34.76	32.49
KRH68880	Soybean	endoplasmic reticulum	34.76	32.49

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100801608	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02004795
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G081100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
UniProt:I1KRC0	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH42279	ProteinID:KRH42279
ProteinID:KRH42279.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF262	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00023386D6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:6137038..6140020

Molecular Weight (calculated)

49959.1 Da

IEP (calculated)

4.531

GRAVY (calculated)

-0.397

Length

443 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGKYSGDS ELQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCM QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LKMSSTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV DEEEYEDEEE EEA

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.