Factsheet for TraesCS5B01G418700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 19786127
golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G030500.1
TraesCS5B01G028900.1
TraesCS5D01G038700.1
TraesCS6A01G389600.1
TraesCS7B01G044100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	TraesCS5A01G030500.1	AT2G30410.1	20638386
AT4G20890.1	TraesCS5B01G028900.1	AT2G30410.1	20638386
AT4G20890.1	TraesCS5D01G038700.1	AT2G30410.1	20638386
AT4G20890.1	TraesCS6A01G389600.1	AT2G30410.1	20638386
AT5G44340.1	TraesCS7B01G044100.1	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G424100.1	Wheat	cytosol	100.0	100.0
TraesCS5A01G416400.1	Wheat	cytosol	99.33	99.55
Zm00001d013139_P001	Maize	cytosol	64.49	97.95
EER93354	Sorghum	cytosol	97.75	97.75
Os03t0780600-01	Rice	plastid	97.08	97.3
GSMUA_Achr11P...	Banana	cytosol	75.73	96.29
Zm00001d034022_P001	Maize	cytosol	56.63	96.18
TraesCS6B01G169300.1	Wheat	cytosol	95.96	96.17
GSMUA_Achr8P07060_001	Banana	cytosol	83.82	95.89
KRH11812	Soybean	nucleus	95.96	95.74
GSMUA_Achr2P01410_001	Banana	cytosol	83.82	95.64
KRH36829	Soybean	nucleus	95.73	95.52
VIT_10s0003g05320.t01	Wine grape	cytosol	95.51	95.51
CDY31638	Canola	cytosol	95.28	95.5
KRH58404	Soybean	nucleus	94.83	95.48
GSMUA_Achr3P23490_001	Banana	cytosol	79.78	95.17
GSMUA_Achr5P26680_001	Banana	cytosol	82.92	95.1
KRH42279	Soybean	cytosol	94.61	95.03
CDX84283	Canola	cytosol	95.06	94.84
GSMUA_Achr5P00290_001	Banana	cytosol	83.37	94.4
TraesCS1B01G269400.1	Wheat	cytosol	94.38	94.38
TraesCS3B01G363500.1	Wheat	golgi, unclear	94.16	93.74
CDX94014	Canola	cytosol	93.71	93.5
TraesCS1B01G320800.1	Wheat	cytosol	93.71	93.29
Bra020912.1-P	Field mustard	cytosol	93.48	93.27
CDX98679	Canola	cytosol	93.48	93.27
TraesCS4B01G366500.1	Wheat	cytosol	93.93	93.1
CDX76444	Canola	cytosol	93.26	93.05
CDY31428	Canola	cytosol	93.26	93.05
AT4G20890.1	Thale cress	cytosol	92.81	93.02
AT5G44340.1	Thale cress	cytosol	92.81	93.02
Bra038795.1-P	Field mustard	cytosol	92.81	92.81
CDX82788	Canola	cytosol	92.81	92.6
CDX79013	Canola	cytosol	92.81	92.6
CDX96965	Canola	cytosol	92.58	92.58
Bra027544.1-P	Field mustard	cytosol	92.58	92.58
CDY14924	Canola	cytosol	92.58	92.38
Bra039506.1-P	Field mustard	cytosol	92.58	92.38
CDY60599	Canola	cytosol	92.36	92.36
CDY13108	Canola	cytosol	92.36	92.36
CDY69221	Canola	cytosol	92.36	92.36
Bra033737.1-P	Field mustard	cytosol	92.13	92.13
CDY49002	Canola	cytosol	92.13	92.13
Bra013481.1-P	Field mustard	cytosol	91.69	91.48
TraesCS4B01G017100.1	Wheat	cytosol	91.24	91.24
HORVU5Hr1G100900.2	Barley	cytosol	100.0	87.94
Bra005395.1-P	Field mustard	cytosol	79.55	87.84
GSMUA_Achr6P19990_001	Banana	cytosol	78.88	84.78
TraesCS4B01G056700.1	Wheat	cytosol	42.25	41.69
TraesCS1B01G364500.3	Wheat	cytosol	42.02	41.46
TraesCS2B01G221800.1	Wheat	cytosol	41.8	41.33
TraesCS5B01G412700.1	Wheat	cytosol	41.8	41.24
TraesCS4B01G243100.1	Wheat	cytosol	40.9	40.53
TraesCS1B01G124800.1	Wheat	cytosol	35.51	33.69

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF146
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:TraesCS5B01G418700	EnsemblPlants:TraesCS5B01G418700.1
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	TIGR:cd02187	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:594873416..594875836

Molecular Weight (calculated)

49974.1 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.366

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DGTGRYAGDS DLQLERINVY YNEASGGRFV PRAVLMDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQM YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASACFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDMPPRG LKMAGTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEYDEEEEE ERDAE

Best Arabidopsis Sequence Match ( AT1G20010.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DSTGRYSGDT ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PFGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET

Arabidopsis Description

TUBB5Tubulin beta-5 chain [Source:UniProtKB/Swiss-Prot;Acc:P29513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.