Factsheet for TraesCS4B01G017100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.7	100.0
TraesCS4D01G015400.1	Wheat	cytosol	99.33	99.33
TraesCS4A01G296600.1	Wheat	cytosol	98.88	98.88
Os03t0661300-01	Rice	plasma membrane	94.61	94.39
Zm00001d033457_P001	Maize	plasma membrane	93.71	93.71
EER93713	Sorghum	cytosol	93.26	93.26
Zm00001d013612_P002	Maize	plasma membrane	93.26	92.84
TraesCS6B01G169300.1	Wheat	cytosol	92.13	92.34
TraesCS5B01G418700.1	Wheat	golgi	91.24	91.24
TraesCS3B01G363500.1	Wheat	golgi, unclear	91.24	90.83
TraesCS1B01G269400.1	Wheat	cytosol	90.56	90.56
TraesCS4B01G366500.1	Wheat	cytosol	91.01	90.2
TraesCS1B01G320800.1	Wheat	cytosol	90.11	89.71
VIT_02s0025g03540.t01	Wine grape	cytosol	89.44	89.64
CDX68422	Canola	cytosol	57.75	89.55
KRH41169	Soybean	cytosol	89.21	89.21
HORVU4Hr1G002530.2	Barley	cytosol	98.43	89.02
KRH59870	Soybean	endoplasmic reticulum	88.99	88.79
TraesCS5B01G412700.1	Wheat	cytosol	41.8	41.24
TraesCS4B01G056700.1	Wheat	cytosol	41.12	40.58
TraesCS1B01G364500.3	Wheat	cytosol	40.9	40.35
TraesCS2B01G221800.1	Wheat	cytosol	40.45	40.0
TraesCS4B01G243100.1	Wheat	cytosol	39.55	39.2
TraesCS1B01G124800.1	Wheat	cytosol	35.73	33.9

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF246
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:TraesCS4B01G017100	EnsemblPlants:TraesCS4B01G017100.1
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	TIGR:cd02187	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:12227896..12231118

Molecular Weight (calculated)

49760.8 Da

IEP (calculated)

4.466

GRAVY (calculated)

-0.356

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGV DPTGQYTGSA PEQLERMDVY FNEAGGNRYV PRAVLMDLEP GTMDSLRSGP IGAIFRPDNF VYGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTNP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIPPVG LAMSSTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTS
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA EEDYEEEEEP AADQP

Best Arabidopsis Sequence Match ( AT4G20890.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DQTGQSCGDT DLQLERINVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA

Arabidopsis Description

TUBB9Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UU99]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.