CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.7	100.0
Zm00001d033457_P001	Maize	plasma membrane	99.1	99.1
Zm00001d013612_P002	Maize	plasma membrane	98.65	98.21
Os03t0661300-01	Rice	plasma membrane	94.61	94.39
TraesCS4D01G015400.1	Wheat	cytosol	93.71	93.71
TraesCS4A01G296600.1	Wheat	cytosol	93.71	93.71
TraesCS4B01G017100.1	Wheat	cytosol	93.26	93.26
EER93354	Sorghum	cytosol	92.81	92.81
KXG32297	Sorghum	cytosol	92.58	92.38
EES01623	Sorghum	cytosol	92.58	92.17
EES04582	Sorghum	cytosol	92.13	91.93
EER90205	Sorghum	cytosol	91.91	91.7
EER95686	Sorghum	cytosol	91.46	91.26
CDX68422	Canola	cytosol	58.2	90.24
VIT_02s0025g03540.t01	Wine grape	cytosol	89.44	89.64
KRH41169	Soybean	cytosol	89.44	89.44
KRH59870	Soybean	endoplasmic reticulum	89.44	89.24
HORVU4Hr1G002530.2	Barley	cytosol	93.71	84.76
OQU78011	Sorghum	cytosol	79.1	82.44
KXG36544	Sorghum	cytosol	41.12	40.67
KXG37668	Sorghum	cytosol	41.12	40.58
KXG37669	Sorghum	cytosol	40.9	40.35
EER93374	Sorghum	cytosol	40.22	39.78
EER92631	Sorghum	cytosol	39.33	39.06
OQU78051	Sorghum	cytosol	29.44	32.43
EES19069	Sorghum	cytosol	33.93	32.2

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:8057201	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	UniProt:C5WQE5	ncoils:Coil	EnsemblPlants:EER93713	ProteinID:EER93713	ProteinID:EER93713.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF246	SMART:SM00864	SMART:SM00865	EnsemblPlantsGene:SORBI_3001G146000	SUPFAM:SSF52490	SUPFAM:SSF55307
unigene:Sbi.18826	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001A82A9D	RefSeq:XP_002466715.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:11706466..11710337

Molecular Weight (calculated)

49731.8 Da

IEP (calculated)

4.579

GRAVY (calculated)

-0.358

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGV DSTGRSSGTS PQQLERINVY YNEAGGGRYV PRAVLMDLEP GTMESIRAGP FGGIFRPDNF VYGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTNP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPVG LSMASTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTS
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA EEYDEEEQDG EEEHA

Best Arabidopsis Sequence Match ( AT4G20890.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DQTGQSCGDT DLQLERINVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA

Arabidopsis Description

TUBB9Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UU99]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.