CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES08806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62690.1	EES08806	AT3G50960.1	18390592
AT5G62700.1	EES08806	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027295_P002	Maize	plasma membrane	100.0	100.0
Os03t0105600-01	Rice	plasma membrane	99.1	98.88
TraesCS5A01G534300.1	Wheat	cytosol	98.43	98.21
TraesCSU01G137900.1	Wheat	cytosol	98.43	97.99
CDY67078	Canola	cytosol	86.32	97.72
TraesCS4B01G366500.1	Wheat	cytosol	97.98	97.33
VIT_02s0025g03680.t01	Wine grape	cytosol	97.53	97.32
GSMUA_Achr4P11980_001	Banana	plasma membrane	97.31	97.31
Bra019493.1-P	Field mustard	cytosol	97.53	96.67
CDX84345	Canola	cytosol	97.53	96.67
CDX86102	Canola	plasma membrane	97.53	96.67
CDY00319	Canola	cytosol	97.53	96.67
CDY38073	Canola	cytosol	97.53	96.67
Bra010114.1-P	Field mustard	cytosol	97.53	96.67
Bra018184.1-P	Field mustard	cytosol	97.31	96.66
PGSC0003DMT400078206	Potato	cytosol	96.64	96.64
CDX99087	Canola	cytosol	92.38	96.49
CDY21784	Canola	cytosol	92.38	96.49
AT5G62690.1	Thale cress	cytosol	97.31	96.44
AT5G62700.1	Thale cress	cytosol	97.31	96.44
Bra033796.1-P	Field mustard	cytosol	97.09	96.44
VIT_08s0007g01630.t01	Wine grape	cytosol	96.64	96.42
PGSC0003DMT400053750	Potato	cytosol	96.19	96.4
AT5G23860.1	Thale cress	cytosol	96.86	96.21
Bra009710.1-P	Field mustard	cytosol	96.86	96.21
VIT_16s0050g00380.t01	Wine grape	cytosol	96.86	96.21
KXG32297	Sorghum	cytosol	96.19	96.19
CDX88051	Canola	cytosol	91.7	96.01
CDX80390	Canola	cytosol	96.64	95.99
KRH35301	Soybean	nucleus	96.41	95.98
KRG91525	Soybean	nucleus	96.41	95.98
EES01623	Sorghum	cytosol	96.19	95.97
VIT_06s0004g05870.t01	Wine grape	cytosol	95.96	95.96
KRH65977	Soybean	nucleus	96.41	95.77
KRH75786	Soybean	nucleus	96.41	95.77
EES04582	Sorghum	cytosol	95.52	95.52
EER93354	Sorghum	cytosol	95.07	95.28
Solyc06g076640.2.1	Tomato	nucleus	95.96	94.69
EER90205	Sorghum	cytosol	94.17	94.17
EER93713	Sorghum	cytosol	91.26	91.46
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	95.96	89.54
OQU78011	Sorghum	cytosol	82.06	85.71
KXG37668	Sorghum	cytosol	42.83	42.35
KXG37669	Sorghum	cytosol	42.6	42.13
KXG36544	Sorghum	cytosol	41.48	41.11
EER93374	Sorghum	cytosol	41.26	40.89
EER92631	Sorghum	cytosol	40.81	40.62
EES19069	Sorghum	cytosol	34.98	33.26
OQU78051	Sorghum	cytosol	30.04	33.17

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:8059525	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	UniProt:C5WMT4	ncoils:Coil	EnsemblPlants:EER95686	ProteinID:EER95686	ProteinID:EER95686.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005829	GO:GO:0005856	GO:GO:0005874
GO:GO:0005886	GO:GO:0006950	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009506
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787
GO:GO:0030312	GO:GO:0046686	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	EnsemblPlantsGene:SORBI_3001G540900	SUPFAM:SSF52490	SUPFAM:SSF55307
unigene:Sbi.18555	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001A8332E	RefSeq:XP_002468688.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:80373307..80375237

Molecular Weight (calculated)

50014.1 Da

IEP (calculated)

4.515

GRAVY (calculated)

-0.354

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DATGRYGGDS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGHIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEDEE EGDLQD

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.