Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62700.1 | CDX73765 | AT3G50960.1 | 18390592 |
| AT5G62700.1 | CDX77968 | AT3G50960.1 | 18390592 |
| AT5G62700.1 | CDY26529 | AT3G50960.1 | 18390592 |
| AT5G62700.1 | CDY57635 | AT3G50960.1 | 18390592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99087 | Canola | cytosol | 100.0 | 100.0 |
| CDY67078 | Canola | cytosol | 92.04 | 99.75 |
| CDX88051 | Canola | cytosol | 95.32 | 95.54 |
| CDX86102 | Canola | plasma membrane | 100.0 | 94.89 |
| CDY38073 | Canola | cytosol | 100.0 | 94.89 |
| CDX84345 | Canola | cytosol | 100.0 | 94.89 |
| CDY00319 | Canola | cytosol | 100.0 | 94.89 |
| AT5G62700.1 | Thale cress | cytosol | 99.77 | 94.67 |
| Bra018184.1-P | Field mustard | cytosol | 99.3 | 94.43 |
| EER95686 | Sorghum | cytosol | 96.49 | 92.38 |
| TraesCS5A01G534300.1 | Wheat | cytosol | 95.78 | 91.5 |
| Os03t0105600-01 | Rice | plasma membrane | 95.78 | 91.5 |
| TraesCSU01G137900.1 | Wheat | cytosol | 95.78 | 91.29 |
| PGSC0003DMT400028800 | Potato | cytosol | 95.55 | 91.28 |
| CDY53366 | Canola | cytosol | 95.78 | 91.09 |
| CDX97877 | Canola | cytosol | 95.78 | 91.09 |
| CDY51360 | Canola | cytosol | 95.78 | 91.09 |
| CDY45452 | Canola | cytosol | 95.78 | 91.09 |
| VIT_08s0007g01630.t01 | Wine grape | cytosol | 95.32 | 91.05 |
| TraesCS4B01G366500.1 | Wheat | cytosol | 95.55 | 90.87 |
| Solyc10g086760.1.1 | Tomato | nucleus | 95.08 | 90.62 |
| PGSC0003DMT400049212 | Potato | cytosol | 95.08 | 90.62 |
| CDX80390 | Canola | cytosol | 95.08 | 90.42 |
| Solyc10g085020.1.1 | Tomato | nucleus | 95.78 | 90.09 |
| CDY31638 | Canola | cytosol | 92.27 | 88.74 |
| CDX73198 | Canola | cytosol | 92.74 | 88.59 |
| CDX87664 | Canola | cytosol | 92.74 | 88.59 |
| CDX68422 | Canola | cytosol | 59.25 | 88.15 |
| CDX94014 | Canola | cytosol | 92.04 | 88.12 |
| CDY31428 | Canola | cytosol | 92.04 | 88.12 |
| CDX76444 | Canola | cytosol | 92.04 | 88.12 |
| CDX84283 | Canola | cytosol | 92.04 | 88.12 |
| CDX98679 | Canola | cytosol | 91.8 | 87.89 |
| CDX79013 | Canola | cytosol | 91.57 | 87.67 |
| CDX82788 | Canola | cytosol | 91.57 | 87.67 |
| CDX69693 | Canola | cytosol | 94.38 | 87.42 |
| CDY60599 | Canola | cytosol | 91.1 | 87.42 |
| CDY69221 | Canola | cytosol | 90.87 | 87.19 |
| CDX96965 | Canola | cytosol | 90.87 | 87.19 |
| CDY14924 | Canola | cytosol | 90.87 | 87.0 |
| CDY13108 | Canola | cytosol | 90.63 | 86.97 |
| CDY49002 | Canola | cytosol | 90.63 | 86.97 |
| Zm00001d040509_P001 | Maize | cytosol | 44.5 | 85.59 |
| CDX97180 | Canola | cytosol | 94.38 | 83.78 |
| Zm00001d008216_P002 | Maize | cytosol | 45.67 | 81.59 |
| CDY29334 | Canola | cytosol | 41.45 | 41.07 |
| CDY25017 | Canola | cytosol | 38.41 | 40.0 |
| CDY45043 | Canola | cytosol | 41.69 | 39.56 |
| CDY03583 | Canola | cytosol | 41.69 | 39.56 |
| CDY50974 | Canola | cytosol | 41.45 | 39.33 |
| CDY42295 | Canola | cytosol | 41.45 | 39.33 |
| CDY42294 | Canola | cytosol | 41.45 | 39.33 |
| CDY28123 | Canola | cytosol | 41.45 | 39.33 |
| CDY66630 | Canola | cytosol | 40.05 | 39.31 |
| CDY44942 | Canola | cytosol | 41.22 | 39.11 |
| CDY44941 | Canola | cytosol | 41.22 | 39.11 |
| CDX70890 | Canola | cytosol | 40.98 | 38.89 |
| CDX88875 | Canola | cytosol | 40.98 | 38.89 |
| CDX92501 | Canola | cytosol | 40.98 | 38.89 |
| CDX92502 | Canola | cytosol | 40.98 | 38.89 |
| CDY35856 | Canola | cytosol | 12.41 | 35.57 |
| CDY11370 | Canola | cytosol | 34.66 | 31.29 |
| CDX71723 | Canola | cytosol | 34.66 | 31.29 |
| CDY46272 | Canola | cytosol | 20.37 | 30.1 |
| CDY05559 | Canola | mitochondrion | 27.87 | 23.66 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | GO:A0A078EDI6 | UniProt:A0A078EDI6 |
| InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | EnsemblPlants:CDY21784 | ProteinID:CDY21784 | ProteinID:CDY21784.1 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00016309001 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 |
| PFAM:PF00091 | PFAM:PF03953 | PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 |
| PANTHER:PTHR11588 | PANTHER:PTHR11588:SF259 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 |
| InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C |
| InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0004EF1852 | SEG:seg | : | : |
Description
BnaA06g20530DTubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A078EDI6]
Coordinates
chrLK032124:-:172007..173570
Molecular Weight (calculated)
48253.9 Da
IEP (calculated)
4.418
GRAVY (calculated)
-0.440
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSLV ENADECMVLD NEALYDICFR TLKLTTPSFG
201: DLNHLISATM SGVTCCLRFP GQLNSDLRKL AVNLIPFPRL HFFMVGFAPL TSRGSQQYRS LTVPELTQQM WDSKNMMCAA DPRHGRYLTA SAMFRGKMST
301: KEVDEQMLNV QNKNSSYFVE WIPNNVKSTV CDIPPTGLKM ASTFIGNSTS IQEMFRRVSE QFTAMFRRKA FLHWYTGEGM DEMEFTEAES NMNDLVSEYQ
401: QYQDATADEE GEYEDEEEGE YQQEEEY
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSLV ENADECMVLD NEALYDICFR TLKLTTPSFG
201: DLNHLISATM SGVTCCLRFP GQLNSDLRKL AVNLIPFPRL HFFMVGFAPL TSRGSQQYRS LTVPELTQQM WDSKNMMCAA DPRHGRYLTA SAMFRGKMST
301: KEVDEQMLNV QNKNSSYFVE WIPNNVKSTV CDIPPTGLKM ASTFIGNSTS IQEMFRRVSE QFTAMFRRKA FLHWYTGEGM DEMEFTEAES NMNDLVSEYQ
401: QYQDATADEE GEYEDEEEGE YQQEEEY
001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY
Arabidopsis Description
TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.