CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11370	Canola	cytosol	100.0	100.0
Bra007622.1-P	Field mustard	cytosol	100.0	100.0
AT3G61650.1	Thale cress	cytosol	98.52	98.31
AT5G05620.1	Thale cress	cytosol	96.83	96.62
VIT_15s0046g01350.t01	Wine grape	cytosol	95.56	95.36
KRH68880	Soybean	endoplasmic reticulum	93.45	93.25
KRG97131	Soybean	cytosol	93.23	93.04
PGSC0003DMT400039263	Potato	cytosol	92.39	92.19
Solyc03g111380.2.1	Tomato	cytosol	92.18	91.98
Os05t0156600-01	Rice	cytosol	91.12	91.9
EES19069	Sorghum	cytosol	90.27	91.04
TraesCS1D01G107300.1	Wheat	cytosol	88.37	89.13
TraesCS1B01G124800.1	Wheat	cytosol	88.37	89.13
TraesCS1A01G099400.1	Wheat	cytosol	88.37	89.13
HORVU1Hr1G023030.2	Barley	cytosol	88.37	89.13
GSMUA_Achr1P14750_001	Banana	cytosol	89.43	88.49
Zm00001d035567_P001	Maize	nucleus	44.61	84.4
Zm00001d013636_P001	Maize	nucleus, plastid	41.65	75.19
CDX96965	Canola	cytosol	34.25	36.4
CDY60599	Canola	cytosol	34.25	36.4
CDY13108	Canola	cytosol	34.25	36.4
CDY14924	Canola	cytosol	34.25	36.32
CDY69221	Canola	cytosol	34.04	36.18
CDY49002	Canola	cytosol	33.83	35.96
CDX84283	Canola	cytosol	33.62	35.65
CDY31638	Canola	cytosol	33.4	35.59
CDX73198	Canola	cytosol	33.62	35.57
CDX87664	Canola	cytosol	33.62	35.57
CDX97877	Canola	cytosol	33.62	35.41
CDY51360	Canola	cytosol	33.62	35.41
CDY00319	Canola	cytosol	33.62	35.33
CDX84345	Canola	cytosol	33.62	35.33
CDX86102	Canola	plasma membrane	33.62	35.33
CDY38073	Canola	cytosol	33.62	35.33
CDX98679	Canola	cytosol	33.19	35.2
CDX94014	Canola	cytosol	33.19	35.2
CDX76444	Canola	cytosol	33.19	35.2
CDY45452	Canola	cytosol	33.4	35.19
CDY53366	Canola	cytosol	33.4	35.19
CDY67078	Canola	cytosol	29.18	35.03
CDY31428	Canola	cytosol	32.98	34.98
CDX80390	Canola	cytosol	33.19	34.97
CDX82788	Canola	cytosol	32.77	34.75
CDX79013	Canola	cytosol	32.77	34.75
CDY21784	Canola	cytosol	31.29	34.66
CDX99087	Canola	cytosol	31.29	34.66
CDX69693	Canola	cytosol	33.62	34.49
CDX88051	Canola	cytosol	30.87	34.27
CDX97180	Canola	cytosol	33.62	33.06
CDY25017	Canola	cytosol	28.12	32.44
CDY66630	Canola	cytosol	28.75	31.26
CDX68422	Canola	cytosol	18.82	31.01
CDY50974	Canola	cytosol	29.39	30.89
CDY45043	Canola	cytosol	29.39	30.89
CDY28123	Canola	cytosol	29.39	30.89
CDY03583	Canola	cytosol	29.39	30.89
CDY42295	Canola	cytosol	29.18	30.67
CDY42294	Canola	cytosol	29.18	30.67
CDX70890	Canola	cytosol	29.18	30.67
CDX88875	Canola	cytosol	29.18	30.67
CDY44942	Canola	cytosol	28.96	30.44
CDX92501	Canola	cytosol	28.96	30.44
CDY44941	Canola	cytosol	28.96	30.44
CDX92502	Canola	cytosol	28.96	30.44
CDY29334	Canola	cytosol	27.48	30.16
CDY35856	Canola	cytosol	6.98	22.15
CDY46272	Canola	cytosol	12.9	21.11
CDY05559	Canola	mitochondrion	21.35	20.08

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078FAD8	UniProt:A0A078FAD8
EnsemblPlants:CDX71723	ProteinID:CDX71723	ProteinID:CDX71723.1	ProteinID:CDY11370.1	GO:GO:0000166	GO:GO:0000930
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017
GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0031122
EnsemblPlantsGene:GSBRNA2T00155414001	InterPro:Gamma_tubulin	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01164	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF7
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000151E3F4	:	:	:	:	:

Description

BnaC08g31510DTubulin gamma chain [Source:UniProtKB/TrEMBL;Acc:A0A078FAD8]

Coordinates

chrLK031795:+:142322..145314

Molecular Weight (calculated)

53202.5 Da

IEP (calculated)

5.786

GRAVY (calculated)

-0.307

Length

473 amino acids

Sequence
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL TRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQP
301: KNVMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFDNDL SEFDEARDII ESLVDEYKAC ESPDYIKWGM EDPEQLVTGE GNASGVVDPR MAF

Best Arabidopsis Sequence Match ( AT3G61650.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF

Arabidopsis Description

TUBG1Tubulin gamma-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P38557]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.