CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02064
CDY10736

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	CDY02064	AT2G30410.1	20638386
AT4G20890.1	CDY10736	AT2G30410.1	20638386

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31428	Canola	cytosol	99.33	99.33
CDX98679	Canola	cytosol	99.33	99.33
CDX76444	Canola	cytosol	99.33	99.33
CDX82788	Canola	cytosol	98.65	98.65
CDX79013	Canola	cytosol	98.65	98.65
AT4G20890.1	Thale cress	cytosol	97.31	97.75
CDX96965	Canola	cytosol	95.96	96.18
GSMUA_Achr11P...	Banana	cytosol	75.34	96.0
CDY14924	Canola	cytosol	95.96	95.96
CDY13108	Canola	cytosol	95.74	95.96
CDY60599	Canola	cytosol	95.74	95.96
CDY69221	Canola	cytosol	95.07	95.28
Zm00001d036626_P001	Maize	cytosol	48.43	95.15
CDY49002	Canola	cytosol	94.84	95.06
CDY67078	Canola	cytosol	83.86	94.92
VIT_10s0003g05320.t01	Wine grape	cytosol	94.62	94.83
CDY31638	Canola	cytosol	94.39	94.82
KRH58404	Soybean	nucleus	93.95	94.8
KRH11812	Soybean	nucleus	94.62	94.62
EES04582	Sorghum	cytosol	94.62	94.62
CDX84283	Canola	cytosol	94.62	94.62
GSMUA_Achr2P01410_001	Banana	cytosol	82.74	94.62
Os03t0780600-01	Rice	plastid	94.17	94.59
GSMUA_Achr5P26680_001	Banana	cytosol	82.29	94.59
KRH42279	Soybean	cytosol	93.95	94.58
KRH36829	Soybean	nucleus	94.39	94.39
Os06t0671900-01	Rice	plasma membrane	94.39	94.39
GSMUA_Achr3P23490_001	Banana	cytosol	78.92	94.37
TraesCS6B01G169300.1	Wheat	cytosol	93.95	94.37
GSMUA_Achr8P07060_001	Banana	cytosol	82.29	94.34
EER90205	Sorghum	cytosol	94.17	94.17
TraesCS7A01G466600.1	Wheat	golgi	94.17	94.17
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	94.17	94.17
TraesCS7D01G454200.1	Wheat	cytosol	94.17	94.17
EER93354	Sorghum	cytosol	93.95	94.16
TraesCS6D01G130500.2	Wheat	golgi	93.95	94.16
Os02t0167300-01	Rice	plasma membrane	93.95	93.74
HORVU6Hr1G027620.1	Barley	plasma membrane	93.72	93.72
TraesCS5B01G418700.1	Wheat	golgi	93.5	93.71
TraesCS5D01G424100.1	Wheat	cytosol	93.5	93.71
GSMUA_Achr5P00290_001	Banana	cytosol	82.51	93.64
Zm00001d013139_P001	Maize	cytosol	61.44	93.52
Zm00001d015348_P002	Maize	plastid	93.05	93.47
TraesCS5A01G416400.1	Wheat	cytosol	93.05	93.47
Zm00001d034022_P001	Maize	cytosol	54.71	93.13
Zm00001d046996_P001	Maize	cytosol	48.21	93.07
CDY53366	Canola	cytosol	93.27	92.65
CDX73198	Canola	cytosol	92.83	92.62
CDX87664	Canola	cytosol	92.83	92.62
CDY00319	Canola	cytosol	93.27	92.44
CDY38073	Canola	cytosol	93.27	92.44
CDX84345	Canola	cytosol	93.27	92.44
CDX86102	Canola	plasma membrane	93.27	92.44
CDY51360	Canola	cytosol	93.05	92.43
CDY45452	Canola	cytosol	93.05	92.43
CDX97877	Canola	cytosol	93.05	92.43
CDX80390	Canola	cytosol	92.83	92.2
CDX99087	Canola	cytosol	88.12	92.04
CDY21784	Canola	cytosol	88.12	92.04
CDX88051	Canola	cytosol	87.67	91.78
GSMUA_Achr6P04600_001	Banana	cytosol	85.87	90.54
CDX68422	Canola	cytosol	58.07	90.24
CDX69693	Canola	cytosol	92.6	89.59
CDX97180	Canola	cytosol	92.6	85.86
GSMUA_Achr6P19990_001	Banana	cytosol	77.35	83.33
HORVU5Hr1G100900.2	Barley	cytosol	93.5	82.41
CDY25017	Canola	cytosol	39.46	42.93
CDY66630	Canola	cytosol	41.48	42.53
CDY45043	Canola	cytosol	42.38	42.0
CDY03583	Canola	cytosol	42.38	42.0
CDY42295	Canola	cytosol	42.15	41.78
CDY42294	Canola	cytosol	42.15	41.78
CDY28123	Canola	cytosol	42.15	41.78
CDY50974	Canola	cytosol	42.15	41.78
CDY44941	Canola	cytosol	41.93	41.56
CDY44942	Canola	cytosol	41.93	41.56
CDX88875	Canola	cytosol	41.7	41.33
CDX70890	Canola	cytosol	41.7	41.33
CDX92502	Canola	cytosol	41.48	41.11
CDX92501	Canola	cytosol	41.48	41.11
CDY29334	Canola	cytosol	39.46	40.84
CDY35856	Canola	cytosol	11.44	34.23
CDY11370	Canola	cytosol	35.2	33.19
CDX71723	Canola	cytosol	35.2	33.19
CDY46272	Canola	cytosol	18.39	28.37
CDY05559	Canola	mitochondrion	29.37	26.04

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078E037	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	EnsemblPlants:CDX94014	ProteinID:CDX94014	ProteinID:CDX94014.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00156896001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF245	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EDC117
SEG:seg	:	:	:	:	:

Description

BnaC07g36480D

Coordinates

chrLK031879:+:124493..126440

Molecular Weight (calculated)

50038.1 Da

IEP (calculated)

4.377

GRAVY (calculated)

-0.354

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHAI DPTGQYCGDS DLQLERINVY YNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSNP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASALFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEEEE EEEEEA

Best Arabidopsis Sequence Match ( AT4G20890.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DQTGQSCGDT DLQLERINVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA

Arabidopsis Description

TUBB9Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UU99]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.