Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018315.1-P | Field mustard | cytosol | 99.09 | 99.09 |
| CDY10736 | Canola | cytosol | 99.09 | 99.09 |
| AT2G30410.1 | Thale cress | cytosol, mitochondrion | 94.55 | 92.04 |
| Os02t0816500-01 | Rice | cytosol | 64.55 | 78.89 |
| PGSC0003DMT400046252 | Potato | cytosol | 74.55 | 72.57 |
| VIT_15s0021g01180.t01 | Wine grape | cytosol | 76.36 | 71.79 |
| EES06012 | Sorghum | cytosol | 72.73 | 71.43 |
| KRH27177 | Soybean | cytosol | 73.64 | 71.05 |
| KRH22160 | Soybean | cytosol, mitochondrion | 72.73 | 70.8 |
| GSMUA_Achr1P20090_001 | Banana | cytosol, mitochondrion | 71.82 | 70.54 |
| TraesCS5A01G030500.1 | Wheat | cytosol | 70.91 | 68.42 |
| TraesCS5B01G028900.1 | Wheat | cytosol | 70.91 | 68.42 |
| TraesCS5D01G038700.1 | Wheat | cytosol | 70.91 | 68.42 |
| Solyc01g068400.2.1 | Tomato | cytosol | 45.45 | 65.79 |
| TraesCS6A01G389600.1 | Wheat | mitochondrion | 57.27 | 61.76 |
| Zm00001d018478_P001 | Maize | extracellular | 71.82 | 54.11 |
| HORVU6Hr1G090650.2 | Barley | cytosol | 29.09 | 50.79 |
| HORVU5Hr1G007960.1 | Barley | cytosol, plastid | 70.0 | 46.67 |
Protein Annotations
| Gene3D:1.20.58.90 | MapMan:20.3.3.1.1 | GO:A0A078EN01 | EnsemblPlants:CDY02064 | ProteinID:CDY02064 | ProteinID:CDY02064.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007021 | GO:GO:0007023 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0048487 | EnsemblPlantsGene:GSBRNA2T00113427001 | PFAM:PD010430 |
| PFAM:PF02970 | PANTHER:PTHR21500 | SUPFAM:SSF46988 | InterPro:TBCA | InterPro:TBCA_sf | UniParc:UPI0004EE2473 |
Description
BnaC04g14370D
Coordinates
chrLK031931:+:1061044..1062161
Molecular Weight (calculated)
12352.6 Da
IEP (calculated)
4.871
GRAVY (calculated)
-0.842
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLD SALADLKSTL AGLEETTGPE VEDAKKTVAD
101: VEKQFPTEDA
101: VEKQFPTEDA
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
101: VADVEKQFPT EDA
Arabidopsis Description
TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.