Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06012 | Sorghum | cytosol | 79.41 | 72.32 |
| TraesCS5A01G030500.1 | Wheat | cytosol | 80.39 | 71.93 |
| HORVU6Hr1G090650.2 | Barley | cytosol | 44.12 | 71.43 |
| GSMUA_Achr1P20090_001 | Banana | cytosol, mitochondrion | 71.57 | 65.18 |
| KRH27177 | Soybean | cytosol | 71.57 | 64.04 |
| KRH22160 | Soybean | cytosol, mitochondrion | 68.63 | 61.95 |
| AT2G30410.1 | Thale cress | cytosol, mitochondrion | 66.67 | 60.18 |
| VIT_15s0021g01180.t01 | Wine grape | cytosol | 68.63 | 59.83 |
| PGSC0003DMT400046252 | Potato | cytosol | 64.71 | 58.41 |
| Bra018315.1-P | Field mustard | cytosol | 62.75 | 58.18 |
| CDY10736 | Canola | cytosol | 62.75 | 58.18 |
| CDY02064 | Canola | cytosol | 61.76 | 57.27 |
| Solyc01g068400.2.1 | Tomato | cytosol | 42.16 | 56.58 |
| Bra022798.1-P | Field mustard | cytosol | 40.2 | 56.16 |
| Zm00001d018478_P001 | Maize | extracellular | 79.41 | 55.48 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G389600.1 | EnsemblPlantsGene:TraesCS6A01G389600 | Gene3D:1.20.58.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0007021 | GO:GO:0007023 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0048487 |
| InterPro:TBCA | InterPro:TBCA_sf | ncoils:Coil | PANTHER:PTHR21500 | PFAM:PD010430 | PFAM:PF02970 |
| SEG:seg | SUPFAM:SSF46988 | MapMan:20.3.3.1.1 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:605038538..605039803
Molecular Weight (calculated)
11369.5 Da
IEP (calculated)
4.608
GRAVY (calculated)
-0.691
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATLRSLGI KTRTCRRAVR ELRSYEEEVE KEAAKTAAMK ERGADPYDLK QQENVLAESR MMIPDCHKRL EATLAELEAT LAELKESGEQ GDEIGEAESA
101: IT
101: IT
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
101: VADVEKQFPT EDA
Arabidopsis Description
TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.