CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH11812
KRH36829
KRH42279
KRH54462
KRH57009
KRH58404
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30410.1	KRH03376	AT3G48100.1	18642946
AT2G30410.1	KRH54462	AT3G48100.1	18642946
AT2G30410.1	KRH57009	AT3G48100.1	18642946
AT2G30410.1	KRH63457	AT3G48100.1	18642946
AT2G30410.1	KRH11812	AT4G20890.1	20638386
AT2G30410.1	KRH36829	AT4G20890.1	20638386
AT2G30410.1	KRH42279	AT4G20890.1	20638386
AT2G30410.1	KRH58404	AT4G20890.1	20638386

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27177	Soybean	cytosol	93.81	92.98
PGSC0003DMT400046252	Potato	cytosol	78.76	78.76
AT2G30410.1	Thale cress	cytosol, mitochondrion	77.88	77.88
Os02t0816500-01	Rice	cytosol	61.95	77.78
VIT_15s0021g01180.t01	Wine grape	cytosol	78.76	76.07
EES06012	Sorghum	cytosol	75.22	75.89
TraesCS5D01G038700.1	Wheat	cytosol	76.11	75.44
TraesCS5B01G028900.1	Wheat	cytosol	76.11	75.44
TraesCS5A01G030500.1	Wheat	cytosol	76.11	75.44
Bra018315.1-P	Field mustard	cytosol	71.68	73.64
CDY10736	Canola	cytosol	71.68	73.64
GSMUA_Achr1P20090_001	Banana	cytosol, mitochondrion	72.57	73.21
CDY02064	Canola	cytosol	70.8	72.73
Solyc01g068400.2.1	Tomato	cytosol	47.79	71.05
TraesCS6A01G389600.1	Wheat	mitochondrion	61.95	68.63
Bra022798.1-P	Field mustard	cytosol	43.36	67.12
HORVU6Hr1G090650.2	Barley	cytosol	36.28	65.08
Zm00001d018478_P001	Maize	extracellular	74.34	57.53
HORVU5Hr1G007960.1	Barley	cytosol, plastid	75.22	51.52

Protein Annotations

Gene3D:1.20.58.90	EntrezGene:100527822	MapMan:20.3.3.1.1	EMBL:ACUP02008389	EMBL:BT092700	UniProt:C6T5I8
ncoils:Coil	EnsemblPlantsGene:GLYMA_13G281700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007021
GO:GO:0007023	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0048487	EnsemblPlants:KRH22160
ProteinID:KRH22160	ProteinID:KRH22160.1	ProteinID:KRH22161.1	PFAM:PD010430	PFAM:PF02970	PANTHER:PTHR21500
SUPFAM:SSF46988	InterPro:TBCA	InterPro:TBCA_sf	UniParc:UPI0001B15E1E	:	:

Description

hypothetical protein

Coordinates

chr13:-:38304211..38306896

Molecular Weight (calculated)

12793.2 Da

IEP (calculated)

4.596

GRAVY (calculated)

-0.681

Length

113 amino acids

Sequence
(BLAST)

001: MATVRSLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMTE KGADPHDLKQ QENVLAESRM MIPDCRKRLE AALADLKGIL AELEESDEKA SLEIDEAKNT
101: IVEVEKVFET TED

Best Arabidopsis Sequence Match ( AT2G30410.1 )
(BLAST)

001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA

Arabidopsis Description

TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.