Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g113720.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30410.1 | Solyc03g113720.2.1 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046252 | Potato | cytosol | 98.68 | 66.37 |
| Bra022798.1-P | Field mustard | cytosol | 61.84 | 64.38 |
| HORVU6Hr1G090650.2 | Barley | cytosol | 46.05 | 55.56 |
| KRH27177 | Soybean | cytosol | 76.32 | 50.88 |
| AT2G30410.1 | Thale cress | cytosol, mitochondrion | 71.05 | 47.79 |
| KRH22160 | Soybean | cytosol, mitochondrion | 71.05 | 47.79 |
| GSMUA_Achr1P20090_001 | Banana | cytosol, mitochondrion | 68.42 | 46.43 |
| Bra018315.1-P | Field mustard | cytosol | 67.11 | 46.36 |
| CDY10736 | Canola | cytosol | 67.11 | 46.36 |
| VIT_15s0021g01180.t01 | Wine grape | cytosol | 71.05 | 46.15 |
| Os02t0816500-01 | Rice | cytosol | 53.95 | 45.56 |
| EES06012 | Sorghum | cytosol | 67.11 | 45.54 |
| CDY02064 | Canola | cytosol | 65.79 | 45.45 |
| TraesCS5A01G030500.1 | Wheat | cytosol | 67.11 | 44.74 |
| TraesCS5B01G028900.1 | Wheat | cytosol | 67.11 | 44.74 |
| TraesCS5D01G038700.1 | Wheat | cytosol | 67.11 | 44.74 |
| TraesCS6A01G389600.1 | Wheat | mitochondrion | 56.58 | 42.16 |
| Zm00001d018478_P001 | Maize | extracellular | 68.42 | 35.62 |
| HORVU5Hr1G007960.1 | Barley | cytosol, plastid | 65.79 | 30.3 |
Protein Annotations
| Gene3D:1.20.58.90 | MapMan:20.3.3.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0007021 | GO:GO:0007023 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0048487 |
| UniProt:K4AX86 | PFAM:PD010430 | PFAM:PF02970 | PANTHER:PTHR21500 | SUPFAM:SSF46988 | EnsemblPlantsGene:Solyc01g068400.2 |
| EnsemblPlants:Solyc01g068400.2.1 | InterPro:TBCA | InterPro:TBCA_sf | UniParc:UPI000276356D | : | : |
Description
Tubulin-folding cofactor A [Source:Projected from Arabidopsis thaliana (AT2G30410) UniProtKB/Swiss-Prot;Acc:O04350]
Coordinates
chr1:+:77621135..77629649
Molecular Weight (calculated)
8714.2 Da
IEP (calculated)
4.114
GRAVY (calculated)
-0.850
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MKEKGADPYD LKQQENVLAE SRMMVPDCRK RLEGALEDLK GTLVELEETE EKQGPEFEEA RNIIADVEKL FESSEV
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
101: VADVEKQFPT EDA
Arabidopsis Description
TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.