Factsheet for GSMUA_Achr1P20090_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P01410_001
GSMUA_Achr3P23490_001
GSMUA_Achr5P00290_001
GSMUA_Achr5P26680_001
GSMUA_Achr6P04600_001
GSMUA_Achr6P19990_001
GSMUA_Achr8P07060_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30410.1	GSMUA_Achr11P...	AT4G20890.1	20638386
AT2G30410.1	GSMUA_Achr2P01410_001	AT4G20890.1	20638386
AT2G30410.1	GSMUA_Achr3P23490_001	AT4G20890.1	20638386
AT2G30410.1	GSMUA_Achr5P00290_001	AT4G20890.1	20638386
AT2G30410.1	GSMUA_Achr5P26680_001	AT4G20890.1	20638386
AT2G30410.1	GSMUA_Achr6P04600_001	AT4G20890.1	20638386
AT2G30410.1	GSMUA_Achr6P19990_001	AT4G20890.1	20638386
AT2G30410.1	GSMUA_Achr8P07060_001	AT4G20890.1	20638386

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0816500-01	Rice	cytosol	62.5	77.78
EES06012	Sorghum	cytosol	76.79	76.79
TraesCS5D01G038700.1	Wheat	cytosol	77.68	76.32
TraesCS5B01G028900.1	Wheat	cytosol	77.68	76.32
TraesCS5A01G030500.1	Wheat	cytosol	77.68	76.32
AT2G30410.1	Thale cress	cytosol, mitochondrion	75.0	74.34
PGSC0003DMT400046252	Potato	cytosol	75.0	74.34
VIT_15s0021g01180.t01	Wine grape	cytosol	76.79	73.5
Bra018315.1-P	Field mustard	cytosol	71.43	72.73
CDY10736	Canola	cytosol	71.43	72.73
KRH22160	Soybean	cytosol, mitochondrion	73.21	72.57
CDY02064	Canola	cytosol	70.54	71.82
TraesCS6A01G389600.1	Wheat	mitochondrion	65.18	71.57
KRH27177	Soybean	cytosol	72.32	71.05
Solyc01g068400.2.1	Tomato	cytosol	46.43	68.42
Bra022798.1-P	Field mustard	cytosol	43.75	67.12
HORVU6Hr1G090650.2	Barley	cytosol	35.71	63.49
Zm00001d018478_P001	Maize	extracellular	77.68	59.59
HORVU5Hr1G007960.1	Barley	cytosol, plastid	76.79	52.12

Protein Annotations

Gene3D:1.20.58.90	MapMan:20.3.3.1.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856
GO:GO:0005874	GO:GO:0007021	GO:GO:0007023	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0048487	EnsemblPlantsGene:GSMUA_Achr1G20090_001	EnsemblPlants:GSMUA_Achr1P20090_001	EnsemblPlants:GSMUA_Achr1T20090_001	UniProt:M0S1G7	PFAM:PD010430
PFAM:PF02970	PANTHER:PTHR21500	SUPFAM:SSF46988	InterPro:TBCA	InterPro:TBCA_sf	UniParc:UPI000294AD25

Description

Tubulin-specific chaperone A [Source:GMGC_GENE;Acc:GSMUA_Achr1G20090_001]

Coordinates

chr1:-:15092243..15096338

Molecular Weight (calculated)

12571.0 Da

IEP (calculated)

4.593

GRAVY (calculated)

-0.539

Length

112 amino acids

Sequence
(BLAST)

001: MATLRNLKIK TATCKRILKE LQSYEKEVDR EAAKTADMKE KGADPYDLKQ QENVLAESRM MIPDCHKRLE ASLADLKGIL AEIKESNQQG VEIEEADTII
101: ADVEAFFQAA DA

Best Arabidopsis Sequence Match ( AT2G30410.1 )
(BLAST)

001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA

Arabidopsis Description

TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.