Factsheet for GSMUA_Achr11P25690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P20090_001
GSMUA_Achr2P14840_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	GSMUA_Achr1P20090_001	AT2G30410.1	20638386
AT5G44340.1	GSMUA_Achr2P14840_001	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	3.43	100.0
GSMUA_Achr6P08450_001	Banana	cytosol	96.29	87.08
GSMUA_Achr3P18460_001	Banana	cytosol	95.43	86.53
GSMUA_Achr5P26680_001	Banana	cytosol	92.57	83.51
GSMUA_Achr2P01410_001	Banana	cytosol	92.57	83.08
GSMUA_Achr8P07060_001	Banana	cytosol	91.71	82.52
GSMUA_Achr3P23490_001	Banana	cytosol	87.71	82.31
GSMUA_Achr5P00290_001	Banana	cytosol	92.0	81.93
GSMUA_Achr6P16040_001	Banana	cytosol	90.57	81.07
GSMUA_Achr4P05450_001	Banana	cytosol	64.0	79.72
GSMUA_Achr10P...	Banana	cytosol	96.0	78.69
KRH11812	Soybean	nucleus	98.57	77.35
GSMUA_Achr6P04600_001	Banana	cytosol	93.43	77.31
KRH36829	Soybean	nucleus	98.29	77.13
KRH58404	Soybean	nucleus	97.14	76.92
EES04582	Sorghum	cytosol	98.0	76.91
VIT_10s0003g05320.t01	Wine grape	cytosol	97.71	76.85
Os06t0671900-01	Rice	plasma membrane	97.71	76.68
CDY31638	Canola	cytosol	97.14	76.58
Os03t0780600-01	Rice	plastid	97.14	76.58
KRH42279	Soybean	cytosol	96.86	76.52
EER93354	Sorghum	cytosol	97.14	76.4
Os02t0167300-01	Rice	plasma membrane	97.43	76.29
EER90205	Sorghum	cytosol	97.14	76.23
TraesCS6D01G130500.2	Wheat	golgi	96.86	76.18
TraesCS6B01G169300.1	Wheat	cytosol	96.57	76.13
Zm00001d015348_P002	Maize	plastid	96.57	76.13
CDX84283	Canola	cytosol	96.86	76.01
HORVU6Hr1G027620.1	Barley	plasma membrane	96.57	75.78
TraesCS5B01G418700.1	Wheat	golgi	96.29	75.73
TraesCS5D01G424100.1	Wheat	cytosol	96.29	75.73
TraesCS5A01G416400.1	Wheat	cytosol	95.71	75.45
AT5G44340.1	Thale cress	cytosol	95.71	75.45
AT4G20890.1	Thale cress	cytosol	95.71	75.45
CDX94014	Canola	cytosol	96.0	75.34
Bra020912.1-P	Field mustard	cytosol	95.71	75.11
GSMUA_Achr4P11980_001	Banana	plasma membrane	95.71	75.11
CDY31428	Canola	cytosol	95.71	75.11
CDX98679	Canola	cytosol	95.71	75.11
Bra027544.1-P	Field mustard	cytosol	95.43	75.06
CDX96965	Canola	cytosol	95.43	75.06
Bra039506.1-P	Field mustard	cytosol	95.43	74.89
CDX76444	Canola	cytosol	95.43	74.89
CDX79013	Canola	cytosol	95.43	74.89
CDX82788	Canola	cytosol	95.43	74.89
CDY14924	Canola	cytosol	95.43	74.89
Bra038795.1-P	Field mustard	cytosol	95.14	74.83
CDY60599	Canola	cytosol	95.14	74.83
CDY13108	Canola	cytosol	95.14	74.83
GSMUA_AchrUn_...	Banana	cytosol	77.71	74.73
TraesCS7A01G466600.1	Wheat	golgi	95.14	74.66
TraesCS7D01G454200.1	Wheat	cytosol	95.14	74.66
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	95.14	74.66
GSMUA_Achr1P17290_001	Banana	cytosol	78.57	74.53
CDY69221	Canola	cytosol	94.57	74.38
Bra033737.1-P	Field mustard	cytosol	94.57	74.38
CDY49002	Canola	cytosol	94.29	74.16
Bra013481.1-P	Field mustard	cytosol	94.0	73.77
GSMUA_Achr4P26250_001	Banana	cytosol	91.71	71.97
GSMUA_Achr8P33350_001	Banana	cytosol	60.29	69.87
GSMUA_Achr5P12310_001	Banana	cytosol	68.0	69.59
GSMUA_Achr5P10720_001	Banana	cytosol	73.14	68.09
Bra005395.1-P	Field mustard	cytosol	76.86	66.75
HORVU5Hr1G100900.2	Barley	cytosol	96.29	66.6
Zm00001d036626_P001	Maize	cytosol	43.14	66.52
Zm00001d046996_P001	Maize	cytosol	43.43	65.8
GSMUA_Achr5P21740_001	Banana	cytosol	94.0	65.41
Zm00001d034022_P001	Maize	cytosol	48.86	65.27
Zm00001d013139_P001	Maize	cytosol	54.57	65.19
GSMUA_Achr6P19990_001	Banana	cytosol	75.71	64.01
GSMUA_Achr7P17960_001	Banana	cytosol	38.57	34.01
GSMUA_Achr5P14830_001	Banana	cytosol	40.29	32.87
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	41.71	32.44
GSMUA_Achr8P15410_001	Banana	cytosol	22.0	32.35
GSMUA_Achr7P01800_001	Banana	cytosol	37.14	32.1
GSMUA_Achr6P00620_001	Banana	cytosol	29.14	31.0
GSMUA_Achr2P17250_001	Banana	cytosol	28.86	30.7
GSMUA_Achr6P29670_001	Banana	cytosol	19.14	30.18
GSMUA_Achr7P08080_001	Banana	cytosol	26.86	29.94
GSMUA_Achr1P14750_001	Banana	cytosol	34.29	25.1

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr11G25690_001	EnsemblPlants:GSMUA_Achr11P25690_001	EnsemblPlants:GSMUA_Achr11T25690_001	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	UniProt:M0RVE9	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF256	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00029501E8	SEG:seg	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr11G25690_001]

Coordinates

chr11:+:24743565..24746792

Molecular Weight (calculated)

39180.4 Da

IEP (calculated)

4.392

GRAVY (calculated)

-0.350

Length

350 amino acids

Sequence
(BLAST)

001: MDSVRSGPIG QIFRPDNFVF GQSGAGNNWA KGHYTEGAEL IDSVLDVVRK EAENCDCLQG FQVCHSLGGG TGSGMGTLLI SKIREEYPDR MMLTFSVFPS
101: PKVSDTVVEP YNATLSVHQL VENADECMVL DNEALYDICF RTLKLANPTF GDLNHLISAT MSGVTCCLRF PGQLNSDLRK LAVNLIPFPR LHFFMVGFAP
201: LTSRGSQQYR ALTVPELTQQ MWDAKNMMCA ADPRHGRYLT ASAMFRGKMS TKEVDEQMLN VQNKNSSYFV EWIPNNVKSS VCDIPPKGLK MASTFIGNST
301: SIQEMFRRGM DEMEFTEAES NMNDLVAEYQ QYQDATADEE EYEEEDEEAE

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.