Factsheet for GSMUA_Achr6P08450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	3.1	100.0
GSMUA_Achr3P18460_001	Banana	cytosol	96.38	96.63
GSMUA_Achr11P...	Banana	cytosol	87.08	96.29
GSMUA_Achr4P05450_001	Banana	cytosol	65.89	90.75
GSMUA_Achr6P16040_001	Banana	cytosol	89.92	89.0
GSMUA_Achr10P...	Banana	cytosol	97.67	88.52
GSMUA_Achr8P07060_001	Banana	cytosol	86.3	85.86
GSMUA_Achr5P26680_001	Banana	cytosol	86.05	85.82
GSMUA_Achr2P01410_001	Banana	cytosol	86.3	85.64
GSMUA_Achr3P23490_001	Banana	cytosol	82.43	85.52
GSMUA_Achr5P00290_001	Banana	cytosol	86.56	85.24
VIT_08s0040g00980.t01	Wine grape	cytosol	96.9	83.89
Bra008903.1-P	Field mustard	cytosol	96.64	83.48
GSMUA_Achr6P04600_001	Banana	cytosol	90.96	83.22
KRG95065	Soybean	plasma membrane	96.64	83.11
AT5G12250.1	Thale cress	cytosol	96.12	82.85
KRH66728	Soybean	nucleus	95.87	82.63
GSMUA_Achr4P11980_001	Banana	plasma membrane	94.32	81.84
CDX69693	Canola	cytosol	96.64	81.13
GSMUA_AchrUn_...	Banana	cytosol	75.45	80.22
GSMUA_Achr4P26250_001	Banana	cytosol	91.73	79.6
GSMUA_Achr1P17290_001	Banana	cytosol	75.45	79.13
CDX97180	Canola	cytosol	96.64	77.75
GSMUA_Achr5P12310_001	Banana	cytosol	66.67	75.44
GSMUA_Achr8P33350_001	Banana	cytosol	58.66	75.17
GSMUA_Achr5P21740_001	Banana	cytosol	95.09	73.16
GSMUA_Achr5P10720_001	Banana	cytosol	70.8	72.87
GSMUA_Achr6P19990_001	Banana	cytosol	75.19	70.29
GSMUA_Achr8P15410_001	Banana	cytosol	24.81	40.34
GSMUA_Achr6P29670_001	Banana	cytosol	22.48	39.19
GSMUA_Achr7P17960_001	Banana	cytosol	39.53	38.54
GSMUA_Achr6P00620_001	Banana	cytosol	31.52	37.08
GSMUA_Achr5P14830_001	Banana	cytosol	40.83	36.83
GSMUA_Achr2P17250_001	Banana	cytosol	31.27	36.78
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	42.38	36.44
GSMUA_Achr7P08080_001	Banana	cytosol	29.46	36.31
GSMUA_Achr7P01800_001	Banana	cytosol	37.98	36.3
GSMUA_Achr1P14750_001	Banana	cytosol	36.18	29.29

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G08450_001	EnsemblPlants:GSMUA_Achr6P08450_001	EnsemblPlants:GSMUA_Achr6T08450_001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0T594	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF241
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0002960D77	SEG:seg	:	:	:	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr6G08450_001]

Coordinates

chr6:+:5622393..5625908

Molecular Weight (calculated)

43360.4 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.349

Length

387 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKY VPRAVLMDLE PGTMDSVRTG PYGQIFRPDN FVFGQSGAGN NWAKGHYTEG AELIDSVLDV VRKEAENCDC LQGFQVCHSL
101: GGGTGSGMGT LLISKIREEY PDRMLLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC MVLDNEALYD ICFRTLKLTT PSFGDLNHLI SATMSGVTCC
201: LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYRALTVPEL TQQMWDAKNM MCAADPRHGR YLTASAMFRG KMSTKEVDEQ MINVQNKNSS
301: YFVEWIPNNV KSSVCDIPPR GLSMASTFIG NSTSIQEMFR RGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEYYEDEE EEVPQEM

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.