Factsheet for Bra008903.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G12250.1	Thale cress	cytosol	98.21	98.0
CDX69693	Canola	cytosol	100.0	97.18
GSMUA_Achr6P16040_001	Banana	cytosol	84.6	96.93
VIT_08s0040g00980.t01	Wine grape	cytosol	96.43	96.64
GSMUA_Achr6P08450_001	Banana	cytosol	83.48	96.64
KRG95065	Soybean	plasma membrane	96.65	96.22
KRH66728	Soybean	nucleus	96.21	95.99
Bra018379.1-P	Field mustard	cytosol	95.31	95.1
Bra009710.1-P	Field mustard	cytosol	95.09	94.88
Bra010114.1-P	Field mustard	cytosol	95.09	94.67
Bra019493.1-P	Field mustard	cytosol	95.09	94.67
Bra039987.1-P	Field mustard	cytosol	94.87	94.65
Bra018184.1-P	Field mustard	cytosol	94.87	94.65
Bra033796.1-P	Field mustard	cytosol	94.64	94.43
CDX97180	Canola	cytosol	100.0	93.14
Bra015815.1-P	Field mustard	cytosol	92.63	92.84
Bra020912.1-P	Field mustard	cytosol	91.96	92.38
Bra038795.1-P	Field mustard	cytosol	91.29	91.91
Bra027544.1-P	Field mustard	cytosol	91.07	91.69
Bra039506.1-P	Field mustard	cytosol	91.07	91.48
Bra033737.1-P	Field mustard	cytosol	90.85	91.46
Bra013481.1-P	Field mustard	cytosol	90.4	90.81
Bra005395.1-P	Field mustard	cytosol	77.9	86.6
Bra006517.1-P	Field mustard	cytosol	42.86	42.67
Bra020062.1-P	Field mustard	cytosol	42.63	42.44
Bra039648.1-P	Field mustard	cytosol	42.63	42.44
Bra014232.1-P	Field mustard	cytosol	42.63	42.44
Bra020061.1-P	Field mustard	cytosol	42.41	42.22
Bra018825.1-P	Field mustard	cytosol	42.41	42.22
Bra002261.1-P	Field mustard	cytosol	42.19	42.0
Bra002260.1-P	Field mustard	cytosol	37.5	40.98
Bra007622.1-P	Field mustard	cytosol	35.49	33.62
Bra020572.1-P	Field mustard	cytosol	29.69	28.42

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
EnsemblPlantsGene:Bra008903	EnsemblPlants:Bra008903.1	EnsemblPlants:Bra008903.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0005886	GO:GO:0006950	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009409
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M4CXF6	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000151E3D3	SEG:seg	:	:	:	:

Description

AT5G12250 (E=2e-248) TUB6 | TUB6 (BETA-6 TUBULIN); structural constituent of cytoskeleton

Coordinates

chrA10:+:14357900..14359431

Molecular Weight (calculated)

50530.6 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.397

Length

448 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYTGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE EEEVEYQD

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.