CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008903.1-P	Field mustard	cytosol	97.18	100.0
AT5G12250.1	Thale cress	cytosol	95.44	98.0
GSMUA_Achr6P16040_001	Banana	cytosol	82.21	96.93
VIT_08s0040g00980.t01	Wine grape	cytosol	93.71	96.64
GSMUA_Achr6P08450_001	Banana	cytosol	81.13	96.64
KRG95065	Soybean	plasma membrane	93.93	96.22
KRH66728	Soybean	nucleus	93.49	95.99
CDY67078	Canola	cytosol	81.78	95.69
CDX97877	Canola	cytosol	92.41	94.88
CDY53366	Canola	cytosol	92.41	94.88
CDY51360	Canola	cytosol	92.41	94.88
CDY45452	Canola	cytosol	92.41	94.88
CDY00319	Canola	cytosol	92.41	94.67
CDX84345	Canola	cytosol	92.41	94.67
CDX86102	Canola	plasma membrane	92.41	94.67
CDY38073	Canola	cytosol	92.41	94.67
CDX80390	Canola	cytosol	92.19	94.65
CDX88051	Canola	cytosol	87.42	94.6
CDY21784	Canola	cytosol	87.42	94.38
CDX99087	Canola	cytosol	87.42	94.38
CDY31638	Canola	cytosol	90.89	94.37
CDX97180	Canola	cytosol	97.83	93.76
CDX68422	Canola	cytosol	58.35	93.73
CDX84283	Canola	cytosol	90.67	93.72
CDX73198	Canola	cytosol	90.02	92.84
CDX87664	Canola	cytosol	90.02	92.84
CDX94014	Canola	cytosol	89.59	92.6
CDY31428	Canola	cytosol	89.59	92.6
CDX76444	Canola	cytosol	89.15	92.15
CDX98679	Canola	cytosol	89.15	92.15
CDX79013	Canola	cytosol	88.94	91.93
CDX82788	Canola	cytosol	88.94	91.93
CDX96965	Canola	cytosol	88.5	91.69
CDY69221	Canola	cytosol	88.5	91.69
CDY14924	Canola	cytosol	88.5	91.48
CDY13108	Canola	cytosol	88.29	91.46
CDY60599	Canola	cytosol	88.29	91.46
CDY49002	Canola	cytosol	88.29	91.46
CDY25017	Canola	cytosol	38.61	43.41
CDY66630	Canola	cytosol	40.35	42.76
CDY42294	Canola	cytosol	41.65	42.67
CDY42295	Canola	cytosol	41.65	42.67
CDX88875	Canola	cytosol	41.65	42.67
CDX70890	Canola	cytosol	41.65	42.67
CDY44941	Canola	cytosol	41.43	42.44
CDY45043	Canola	cytosol	41.43	42.44
CDY44942	Canola	cytosol	41.43	42.44
CDY03583	Canola	cytosol	41.43	42.44
CDY50974	Canola	cytosol	41.21	42.22
CDY28123	Canola	cytosol	41.21	42.22
CDX92502	Canola	cytosol	41.0	42.0
CDX92501	Canola	cytosol	41.0	42.0
CDY29334	Canola	cytosol	38.61	41.3
CDY35856	Canola	cytosol	11.5	35.57
CDX71723	Canola	cytosol	34.49	33.62
CDY11370	Canola	cytosol	34.49	33.62
CDY46272	Canola	cytosol	18.22	29.07
CDY05559	Canola	mitochondrion	28.85	26.44

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078C3T4	InterPro:Beta_tubulin
EnsemblPlants:CDX69693	ProteinID:CDX69693	ProteinID:CDX69693.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00135723001	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EEC77A	SEG:seg	:

Description

BnaA10g20420D

Coordinates

chrLK031790:+:1432736..1434990

Molecular Weight (calculated)

52032.3 Da

IEP (calculated)

4.418

GRAVY (calculated)

-0.415

Length

461 amino acids

Sequence
(BLAST)

001: MQLFGSDTDY QSKMREILHI QGGQCGNQIG SKFWEVVCDE HGIDPTGRYT GNSDLQLERV NVYYNEASCG RYVPRAILMD LEPGTMDSVR TGPYGQIFRP
101: DNFVFGQSGA GNNWAKGHYT EGAELIDAVL DVVRKEAENC DCLQGFQVCH SLGGGTGSGM GTLLISKIRE EYPDRMMLTF SVFPSPKVSD TVVEPYNATL
201: SVHQLVENAD ECMVLDNEAL YDICFRTLKL TTPSFGDLNH LISATMSGVT CCLRFPGQLN SDLRKLAVNL IPFPRLHFFM VGFAPLTSRG SQQYRALTVP
301: ELTQQMWDSK NMMCAADPRH GRYLTASAMF RGKMSTKEVD EQMINVQNKN SSYFVEWIPN NVKSSVCDIA PRGLSMASTF IGNSTSIQEM FRRVSEQFTA
401: MFRRKAFLHW YTGEGMDEME FTEAESNMND LVSEYQQYQD ATADEEGEYE EEEEEEVEYQ D

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.