CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99087	Canola	cytosol	99.75	92.04
CDY21784	Canola	cytosol	99.75	92.04
CDX88051	Canola	cytosol	97.46	90.14
CDX84345	Canola	cytosol	99.75	87.33
CDY00319	Canola	cytosol	99.75	87.33
CDX86102	Canola	plasma membrane	99.75	87.33
CDY38073	Canola	cytosol	99.75	87.33
EER95686	Sorghum	cytosol	97.72	86.32
PGSC0003DMT400049212	Potato	cytosol	97.97	86.16
TraesCS5A01G534300.1	Wheat	cytosol	97.72	86.13
TraesCSU01G137900.1	Wheat	cytosol	97.72	85.94
Solyc10g086760.1.1	Tomato	nucleus	97.72	85.94
Os03t0105600-01	Rice	plasma membrane	97.46	85.91
PGSC0003DMT400028800	Potato	cytosol	97.46	85.91
VIT_08s0007g01630.t01	Wine grape	cytosol	97.46	85.91
CDX80390	Canola	cytosol	97.46	85.52
TraesCS4B01G366500.1	Wheat	cytosol	97.46	85.52
CDY45452	Canola	cytosol	97.46	85.52
CDY53366	Canola	cytosol	97.21	85.3
CDX97877	Canola	cytosol	97.21	85.3
CDY51360	Canola	cytosol	97.21	85.3
Zm00001d040509_P001	Maize	cytosol	47.97	85.14
Solyc10g085020.1.1	Tomato	nucleus	97.72	84.8
CDY31638	Canola	cytosol	95.18	84.46
CDX84283	Canola	cytosol	95.18	84.08
CDX94014	Canola	cytosol	94.92	83.86
CDX73198	Canola	cytosol	94.92	83.67
CDX87664	Canola	cytosol	94.92	83.67
CDX76444	Canola	cytosol	94.67	83.63
CDX98679	Canola	cytosol	94.67	83.63
CDY31428	Canola	cytosol	94.67	83.63
CDX82788	Canola	cytosol	94.16	83.18
CDX79013	Canola	cytosol	94.16	83.18
CDY60599	Canola	cytosol	92.89	82.25
CDX96965	Canola	cytosol	92.89	82.25
CDY14924	Canola	cytosol	92.89	82.06
CDY69221	Canola	cytosol	92.64	82.02
CDY13108	Canola	cytosol	92.64	82.02
CDY49002	Canola	cytosol	92.39	81.8
CDX69693	Canola	cytosol	95.69	81.78
Zm00001d008216_P002	Maize	cytosol	48.73	80.33
CDX68422	Canola	cytosol	57.87	79.44
CDX97180	Canola	cytosol	95.69	78.38
CDY29334	Canola	cytosol	42.39	38.75
CDY66630	Canola	cytosol	42.64	38.62
CDY25017	Canola	cytosol	39.09	37.56
CDY03583	Canola	cytosol	42.64	37.33
CDY45043	Canola	cytosol	42.64	37.33
CDY42294	Canola	cytosol	42.64	37.33
CDY42295	Canola	cytosol	42.64	37.33
CDY28123	Canola	cytosol	42.39	37.11
CDY44942	Canola	cytosol	42.39	37.11
CDY50974	Canola	cytosol	42.39	37.11
CDX92502	Canola	cytosol	42.39	37.11
CDX92501	Canola	cytosol	42.39	37.11
CDX88875	Canola	cytosol	42.39	37.11
CDX70890	Canola	cytosol	42.39	37.11
CDY44941	Canola	cytosol	42.39	37.11
CDY35856	Canola	cytosol	11.68	30.87
CDY11370	Canola	cytosol	35.03	29.18
CDX71723	Canola	cytosol	35.03	29.18
CDY46272	Canola	cytosol	19.8	26.99
CDY05559	Canola	mitochondrion	27.92	21.87

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078JHJ5	UniProt:A0A078JHJ5
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	EnsemblPlants:CDY67078	ProteinID:CDY67078	ProteinID:CDY67078.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00058778001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF259	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EF432D	SEG:seg	:	:	:

Description

BnaAnng23580DTubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A078JHJ5]

Coordinates

chrLK035731:+:10709..12146

Molecular Weight (calculated)

44229.8 Da

IEP (calculated)

5.140

GRAVY (calculated)

-0.296

Length

394 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP FGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSLV ENADECMVLD NEALYDICFR TLKLTTPSFG
201: DLNHLISATM SGVTCCLRFP GQLNSDLRKL AVNLIPFPRL HFFMVGFAPL TSRGSQQYRS LTVPELTQQM WDSKNMMCAA DPRHGRYLTA SAMFRGKMST
301: KEVDEQMLNV QNKNSSYFVE WIPNNVKSTV CDIPPTGLKM ASTFIGNSTS IQEMFRRVSE QFTAMFRRKA FLHWYTGEGM DEMEFTEAES NMND

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.