CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73765
CDX77968
CDY26529
CDY57635

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44340.1	CDX73765	AT3G50960.1	18390592
AT5G44340.1	CDX77968	AT3G50960.1	18390592
AT5G44340.1	CDY26529	AT3G50960.1	18390592
AT5G44340.1	CDY57635	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039506.1-P	Field mustard	cytosol	100.0	100.0
CDX96965	Canola	cytosol	99.78	100.0
CDY60599	Canola	cytosol	99.55	99.78
CDY13108	Canola	cytosol	99.55	99.78
AT5G44340.1	Thale cress	cytosol	98.43	98.87
CDY69221	Canola	cytosol	98.43	98.65
CDY49002	Canola	cytosol	98.21	98.43
CDX79013	Canola	cytosol	95.96	95.96
CDX82788	Canola	cytosol	95.96	95.96
CDX94014	Canola	cytosol	95.96	95.96
CDY31428	Canola	cytosol	95.74	95.74
CDX76444	Canola	cytosol	95.74	95.74
CDX98679	Canola	cytosol	95.74	95.74
GSMUA_Achr11P...	Banana	cytosol	74.89	95.43
KRH11812	Soybean	nucleus	94.39	94.39
KRH36829	Soybean	nucleus	94.17	94.17
EES04582	Sorghum	cytosol	94.17	94.17
KRH58404	Soybean	nucleus	93.27	94.12
Os06t0671900-01	Rice	plasma membrane	93.95	93.95
GSMUA_Achr5P26680_001	Banana	cytosol	81.61	93.81
VIT_10s0003g05320.t01	Wine grape	cytosol	93.5	93.71
CDY31638	Canola	cytosol	93.27	93.69
TraesCS6B01G169300.1	Wheat	cytosol	93.27	93.69
GSMUA_Achr2P01410_001	Banana	cytosol	81.84	93.59
TraesCS6D01G130500.2	Wheat	golgi	93.27	93.48
KRH42279	Soybean	cytosol	92.83	93.45
Zm00001d036626_P001	Maize	cytosol	47.53	93.39
GSMUA_Achr8P07060_001	Banana	cytosol	81.39	93.32
EER90205	Sorghum	cytosol	93.27	93.27
CDX84283	Canola	cytosol	93.05	93.05
HORVU6Hr1G027620.1	Barley	plasma membrane	93.05	93.05
Os03t0780600-01	Rice	plastid	92.6	93.02
Zm00001d015348_P002	Maize	plastid	92.6	93.02
CDY67078	Canola	cytosol	82.06	92.89
Os02t0167300-01	Rice	plasma membrane	93.05	92.84
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	92.83	92.83
TraesCS7A01G466600.1	Wheat	golgi	92.83	92.83
TraesCS7D01G454200.1	Wheat	cytosol	92.83	92.83
EER93354	Sorghum	cytosol	92.6	92.81
GSMUA_Achr3P23490_001	Banana	cytosol	77.58	92.76
TraesCS5D01G424100.1	Wheat	cytosol	92.38	92.58
TraesCS5B01G418700.1	Wheat	golgi	92.38	92.58
TraesCS5A01G416400.1	Wheat	cytosol	92.15	92.57
Zm00001d046996_P001	Maize	cytosol	47.76	92.21
Zm00001d013139_P001	Maize	cytosol	60.54	92.15
GSMUA_Achr5P00290_001	Banana	cytosol	81.17	92.11
Zm00001d034022_P001	Maize	cytosol	53.81	91.6
CDY00319	Canola	cytosol	92.15	91.33
CDX84345	Canola	cytosol	92.15	91.33
CDX86102	Canola	plasma membrane	92.15	91.33
CDY38073	Canola	cytosol	92.15	91.33
CDY53366	Canola	cytosol	91.93	91.31
CDX73198	Canola	cytosol	91.48	91.28
CDX87664	Canola	cytosol	91.48	91.28
CDY45452	Canola	cytosol	91.7	91.09
CDX97877	Canola	cytosol	91.7	91.09
CDX80390	Canola	cytosol	91.7	91.09
CDY51360	Canola	cytosol	91.7	91.09
CDX99087	Canola	cytosol	87.0	90.87
CDY21784	Canola	cytosol	87.0	90.87
CDX88051	Canola	cytosol	86.55	90.61
GSMUA_Achr6P04600_001	Banana	cytosol	84.75	89.36
CDX68422	Canola	cytosol	57.4	89.2
CDX69693	Canola	cytosol	91.48	88.5
CDX97180	Canola	cytosol	91.48	84.82
GSMUA_Achr6P19990_001	Banana	cytosol	76.91	82.85
HORVU5Hr1G100900.2	Barley	cytosol	92.38	81.42
CDY25017	Canola	cytosol	40.13	43.66
CDY66630	Canola	cytosol	41.7	42.76
CDY45043	Canola	cytosol	43.05	42.67
CDY03583	Canola	cytosol	43.05	42.67
CDY28123	Canola	cytosol	42.83	42.44
CDY42294	Canola	cytosol	42.83	42.44
CDY42295	Canola	cytosol	42.83	42.44
CDY50974	Canola	cytosol	42.83	42.44
CDY44941	Canola	cytosol	42.6	42.22
CDY44942	Canola	cytosol	42.6	42.22
CDX88875	Canola	cytosol	42.38	42.0
CDX70890	Canola	cytosol	42.38	42.0
CDX92502	Canola	cytosol	42.15	41.78
CDX92501	Canola	cytosol	42.15	41.78
CDY29334	Canola	cytosol	40.13	41.53
CDY35856	Canola	cytosol	12.11	36.24
CDX71723	Canola	cytosol	36.32	34.25
CDY11370	Canola	cytosol	36.32	34.25
CDY46272	Canola	cytosol	19.28	29.76
CDY05559	Canola	mitochondrion	29.82	26.44

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078FPV3	UniProt:A0A078FPV3
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	EnsemblPlants:CDY14924	ProteinID:CDY14924	ProteinID:CDY14924.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00084848001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF245	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000253E9A2	SEG:seg	:	:

Description

BnaA02g22660DTubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A078FPV3]

Coordinates

chrLK032048:-:558104..559957

Molecular Weight (calculated)

49971.0 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.350

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EEYDEA

Best Arabidopsis Sequence Match ( AT5G44340.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EYET

Arabidopsis Description

TUBB4Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot;Acc:P24636]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.