CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G14960.2	Thale cress	cytosol	100.0	100.0
CDY28123	Canola	cytosol	100.0	100.0
Bra018825.1-P	Field mustard	cytosol	99.78	99.78
CDY29334	Canola	cytosol	95.56	99.77
CDY25017	Canola	cytosol	90.89	99.76
CDY45043	Canola	cytosol	99.56	99.56
CDY03583	Canola	cytosol	99.56	99.56
CDY66630	Canola	cytosol	96.22	99.54
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	96.44	96.44
KRH35640	Soybean	cytosol, nucleus	96.22	96.44
Solyc08g006890.2.1	Tomato	cytosol	96.44	96.23
PGSC0003DMT400022574	Potato	cytosol	96.22	96.22
KRG91143	Soybean	nucleus	96.0	96.21
Solyc02g087880.2.1	Tomato	cytosol, unclear	95.78	95.78
PGSC0003DMT400003336	Potato	cytosol	95.78	95.78
PGSC0003DMT400030110	Potato	cytosol	95.33	95.12
CDY35856	Canola	cytosol	30.89	93.29
CDY42294	Canola	cytosol	92.44	92.44
CDY42295	Canola	cytosol	92.44	92.44
CDX92501	Canola	cytosol	92.22	92.22
CDX92502	Canola	cytosol	92.22	92.22
CDX88875	Canola	cytosol	92.0	92.0
CDX70890	Canola	cytosol	92.0	92.0
CDY44941	Canola	cytosol	92.0	92.0
CDY44942	Canola	cytosol	92.0	92.0
PGSC0003DMT400085117	Potato	cytosol	56.89	89.2
CDY46272	Canola	cytosol	47.78	74.39
CDY05559	Canola	mitochondrion	66.89	59.84
CDY60599	Canola	cytosol	42.67	43.15
CDX96965	Canola	cytosol	42.44	42.92
CDY14924	Canola	cytosol	42.44	42.83
CDX79013	Canola	cytosol	42.44	42.83
CDX82788	Canola	cytosol	42.44	42.83
CDY31638	Canola	cytosol	42.22	42.79
CDY51360	Canola	cytosol	42.67	42.76
CDY45452	Canola	cytosol	42.67	42.76
CDX97877	Canola	cytosol	42.67	42.76
CDY13108	Canola	cytosol	42.22	42.7
CDY69221	Canola	cytosol	42.22	42.7
CDX84345	Canola	cytosol	42.67	42.67
CDX86102	Canola	plasma membrane	42.67	42.67
CDY38073	Canola	cytosol	42.67	42.67
CDY00319	Canola	cytosol	42.67	42.67
CDY31428	Canola	cytosol	42.22	42.6
CDX76444	Canola	cytosol	42.22	42.6
CDY53366	Canola	cytosol	42.44	42.54
CDY49002	Canola	cytosol	42.0	42.47
CDY67078	Canola	cytosol	37.11	42.39
CDX84283	Canola	cytosol	42.0	42.38
CDX87664	Canola	cytosol	42.0	42.28
CDX73198	Canola	cytosol	42.0	42.28
CDX98679	Canola	cytosol	41.78	42.15
CDX94014	Canola	cytosol	41.78	42.15
CDX80390	Canola	cytosol	42.0	42.09
CDY21784	Canola	cytosol	39.33	41.45
CDX99087	Canola	cytosol	39.33	41.45
CDX69693	Canola	cytosol	42.22	41.21
CDX88051	Canola	cytosol	38.67	40.85
CDX97180	Canola	cytosol	42.22	39.5
CDX68422	Canola	cytosol	24.67	38.68
CDY11370	Canola	cytosol	30.89	29.39
CDX71723	Canola	cytosol	30.89	29.39

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078INH1	UniProt:A0A078INH1
InterPro:Alpha_tubulin	unigene:Bna.778	ProteinID:CDY28123.1	EnsemblPlants:CDY50974	ProteinID:CDY50974	ProteinID:CDY50974.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00097853001	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227
PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000000E42	SEG:seg	:	:

Description

BnaA06g37700DTubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A078INH1]

Coordinates

chrLK032953:+:57807..60358

Molecular Weight (calculated)

49540.6 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.200

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.