CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 24385303
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35640	Soybean	cytosol, nucleus	99.78	99.78
KRH04356	Soybean	cytosol	55.23	98.8
CDY66630	Canola	cytosol	94.88	97.93
KRH62139	Soybean	nucleus	98.22	97.57
KRH52851	Soybean	cytosol, nucleus	98.0	97.35
KRH77187	Soybean	endoplasmic reticulum	97.1	96.67
KRH28301	Soybean	cytosol, endoplasmic reticulum	97.1	96.67
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	96.66	96.44
AT1G50010.1	Thale cress	cytosol	96.44	96.22
CDY45043	Canola	cytosol	96.44	96.22
AT1G04820.1	Thale cress	cytosol	96.44	96.22
Bra014232.1-P	Field mustard	cytosol	96.44	96.22
CDY03583	Canola	cytosol	96.44	96.22
CDY25017	Canola	cytosol	87.75	96.1
CDY29334	Canola	cytosol	92.2	96.06
CDY50974	Canola	cytosol	96.21	96.0
CDY28123	Canola	cytosol	96.21	96.0
AT4G14960.2	Thale cress	cytosol	96.21	96.0
KRH58181	Soybean	nucleus	96.21	96.0
Solyc08g006890.2.1	Tomato	cytosol	96.21	95.79
Bra039648.1-P	Field mustard	cytosol	95.99	95.78
PGSC0003DMT400022574	Potato	cytosol	95.99	95.78
Bra018825.1-P	Field mustard	cytosol	95.99	95.78
Solyc02g087880.2.1	Tomato	cytosol, unclear	95.55	95.33
PGSC0003DMT400003336	Potato	cytosol	95.55	95.33
PGSC0003DMT400030110	Potato	cytosol	95.1	94.68
KRH04357	Soybean	cytosol	34.74	91.76
KRH58942	Soybean	nucleus	91.76	91.76
KRH42841	Soybean	cytosol, nucleus	91.54	91.33
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	89.53	90.74
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.98	89.58
PGSC0003DMT400085117	Potato	cytosol	57.02	89.2
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	84.19	85.14
KRH41834	Soybean	cytosol	42.76	43.15
KRH11812	Soybean	nucleus	42.76	43.05
KRH60536	Soybean	endoplasmic reticulum	42.54	42.92
KRH36829	Soybean	nucleus	42.54	42.83
KRH75786	Soybean	nucleus	42.76	42.76
KRH58404	Soybean	nucleus	42.09	42.76
KRG95065	Soybean	plasma membrane	42.76	42.67
KRH65977	Soybean	nucleus	42.54	42.54
KRH66728	Soybean	nucleus	42.54	42.54
KRH42279	Soybean	cytosol	41.65	42.21
KRG91525	Soybean	nucleus	41.87	41.96
KRH51701	Soybean	nucleus	41.87	41.96
KRH35301	Soybean	nucleus	41.87	41.96
KRH05958	Soybean	nucleus	41.87	41.87
KRH61035	Soybean	nucleus	41.87	41.87
KRH17435	Soybean	nucleus	41.65	40.92
KRH41169	Soybean	cytosol	40.53	40.9
KRH59870	Soybean	endoplasmic reticulum	40.53	40.81
KRH68880	Soybean	endoplasmic reticulum	29.84	28.27
KRG97131	Soybean	cytosol	29.62	28.06

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100781185	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02012663
InterPro:Alpha_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G136000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	UniProt:I1NG45
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRG91143	ProteinID:KRG91143	ProteinID:KRG91143.1
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000233DCFA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:37568901..37571887

Molecular Weight (calculated)

49414.5 Da

IEP (calculated)

4.727

GRAVY (calculated)

-0.192

Length

449 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI GPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFGR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAESG EGQEEDEDY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.