Factsheet for PGSC0003DMT400003336

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087880.2.1	Tomato	cytosol, unclear	100.0	100.0
PGSC0003DMT400022574	Potato	cytosol	96.22	96.22
CDY66630	Canola	cytosol	92.89	96.09
CDY29334	Canola	cytosol	91.78	95.82
AT4G14960.2	Thale cress	cytosol	95.78	95.78
CDY50974	Canola	cytosol	95.78	95.78
CDY28123	Canola	cytosol	95.78	95.78
KRH35640	Soybean	cytosol, nucleus	95.56	95.77
AT1G50010.1	Thale cress	cytosol	95.56	95.56
CDY45043	Canola	cytosol	95.56	95.56
CDY03583	Canola	cytosol	95.56	95.56
AT1G04820.1	Thale cress	cytosol	95.56	95.56
Bra014232.1-P	Field mustard	cytosol	95.56	95.56
Bra018825.1-P	Field mustard	cytosol	95.56	95.56
KRG91143	Soybean	nucleus	95.33	95.55
PGSC0003DMT400030110	Potato	cytosol	95.56	95.34
CDY25017	Canola	cytosol	86.67	95.12
Bra039648.1-P	Field mustard	cytosol	95.11	95.11
PGSC0003DMT400078710	Potato	cytosol	93.11	92.9
PGSC0003DMT400012732	Potato	cytosol	51.78	92.83
PGSC0003DMT400010906	Potato	cytosol	90.44	90.65
PGSC0003DMT400085117	Potato	cytosol	57.11	89.55
PGSC0003DMT400077781	Potato	cytosol	48.67	53.28
PGSC0003DMT400046148	Potato	cytosol	50.44	52.42
PGSC0003DMT400053750	Potato	cytosol	42.67	43.15
PGSC0003DMT400072466	Potato	cytosol	42.67	42.95
PGSC0003DMT400078206	Potato	cytosol	42.22	42.6
PGSC0003DMT400075425	Potato	cytosol	42.44	42.35
PGSC0003DMT400028800	Potato	cytosol	41.78	42.06
PGSC0003DMT400037093	Potato	cytosol	41.78	42.06
PGSC0003DMT400076938	Potato	cytosol	41.56	41.83
PGSC0003DMT400049212	Potato	cytosol	41.56	41.74
PGSC0003DMT400025739	Potato	cytosol	41.56	41.46
PGSC0003DMT400014466	Potato	cytosol	24.67	39.5
PGSC0003DMT400039263	Potato	cytosol	30.44	28.9

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:102587420	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
UniProt:M0ZLG7	PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400001320	PGSC:PGSC0003DMG400001320	EnsemblPlants:PGSC0003DMT400003336
PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00027682E9
RefSeq:XP_006338460.1	SEG:seg	:	:	:	:

Description

Alpha-tubulin [Source:PGSC_GENE;Acc:PGSC0003DMG400001320]

Coordinates

chr2:-:46273513..46276446

Molecular Weight (calculated)

49665.9 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.178

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI KPDGQMPGDV TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFHA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AILLDNEAIY DICRKSLDIE RPTYTNLNRL ISQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNTAFEPSS
301: MMVKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGCESG DGEDDENEEY

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.