Factsheet for PGSC0003DMT400076938

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g035970.2.1	Tomato	nucleus	99.33	99.33
KRG91525	Soybean	nucleus	96.87	96.65
KRH35301	Soybean	nucleus	96.87	96.65
CDX80390	Canola	cytosol	96.87	96.44
Bra009710.1-P	Field mustard	cytosol	96.64	96.21
AT5G23860.1	Thale cress	cytosol	96.64	96.21
CDX88051	Canola	cytosol	91.5	96.01
PGSC0003DMT400037093	Potato	cytosol	95.75	95.75
VIT_02s0025g03680.t01	Wine grape	cytosol	95.75	95.75
PGSC0003DMT400049212	Potato	cytosol	95.3	95.09
PGSC0003DMT400028800	Potato	cytosol	95.08	95.08
GSMUA_Achr1P17290_001	Banana	cytosol	78.3	94.85
PGSC0003DMT400078206	Potato	cytosol	94.63	94.84
PGSC0003DMT400072466	Potato	cytosol	94.63	94.63
Zm00001d040509_P001	Maize	cytosol	46.98	94.59
PGSC0003DMT400053750	Potato	cytosol	93.96	94.38
PGSC0003DMT400014466	Potato	cytosol	58.84	93.59
PGSC0003DMT400075425	Potato	cytosol	92.39	91.57
PGSC0003DMT400025739	Potato	cytosol	92.17	91.35
Zm00001d008216_P002	Maize	cytosol	48.1	89.96
PGSC0003DMT400012732	Potato	cytosol	24.83	44.22
PGSC0003DMT400022574	Potato	cytosol	42.95	42.67
PGSC0003DMT400085117	Potato	cytosol	27.07	42.16
PGSC0003DMT400010906	Potato	cytosol	42.28	42.09
PGSC0003DMT400030110	Potato	cytosol	42.28	41.91
PGSC0003DMT400003336	Potato	cytosol	41.83	41.56
PGSC0003DMT400078710	Potato	cytosol	41.61	41.24
PGSC0003DMT400039263	Potato	cytosol	34.0	32.07
PGSC0003DMT400046148	Potato	cytosol	30.65	31.64
PGSC0003DMT400077781	Potato	cytosol	28.64	31.14

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ProteinID:ABA46752	ProteinID:ABA46752.1
ProteinID:ABA46773	ProteinID:ABA46773.1	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EMBL:DQ200359
EMBL:DQ200380	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005856	GO:GO:0005874	GO:GO:0006950	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M1CXM3
PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400029926	PGSC:PGSC0003DMG400029926	EnsemblPlants:PGSC0003DMT400076938	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002964F8A
SEG:seg	:	:	:	:	:

Description

Tubulin beta chain [Source:PGSC_GENE;Acc:PGSC0003DMG400029926]

Coordinates

chr6:-:37389743..37393815

Molecular Weight (calculated)

50234.4 Da

IEP (calculated)

4.481

GRAVY (calculated)

-0.358

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICAEHGI DSSGRYQGDS DLQLERLNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVAHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA EEEGYDYEDE EDEPLES

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.