Factsheet for PGSC0003DMT400010906

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00480.t01	Wine grape	cytosol	97.33	97.33
Zm00001d021891_P001	Maize	cytosol	96.44	96.22
KXG36544	Sorghum	cytosol	96.44	96.22
Os07t0574800-02	Rice	plasma membrane	96.44	96.22
TraesCS2D01G202200.1	Wheat	cytosol	96.44	96.22
TraesCS2B01G221800.1	Wheat	cytosol	96.44	96.22
TraesCS2A01G185500.2	Wheat	cytosol	96.44	96.22
CDY35856	Canola	cytosol	31.85	95.97
Zm00001d006651_P005	Maize	plasma membrane	95.99	95.78
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	95.77	95.56
PGSC0003DMT400022574	Potato	cytosol	91.76	91.56
PGSC0003DMT400030110	Potato	cytosol	91.54	91.13
PGSC0003DMT400003336	Potato	cytosol	90.65	90.44
HORVU2Hr1G037550.2	Barley	cytosol	90.2	89.6
PGSC0003DMT400078710	Potato	cytosol	89.09	88.69
PGSC0003DMT400012732	Potato	cytosol	48.78	87.25
HORVU2Hr1G037570.3	Barley	cytosol	85.3	86.26
PGSC0003DMT400085117	Potato	cytosol	53.45	83.62
PGSC0003DMT400077781	Potato	cytosol	49.22	53.77
PGSC0003DMT400046148	Potato	cytosol	50.78	52.66
PGSC0003DMT400053750	Potato	cytosol	42.32	42.7
PGSC0003DMT400075425	Potato	cytosol	42.76	42.57
PGSC0003DMT400076938	Potato	cytosol	42.09	42.28
PGSC0003DMT400072466	Potato	cytosol	42.09	42.28
PGSC0003DMT400037093	Potato	cytosol	41.65	41.83
PGSC0003DMT400078206	Potato	cytosol	41.43	41.7
PGSC0003DMT400025739	Potato	cytosol	41.87	41.69
PGSC0003DMT400028800	Potato	cytosol	41.43	41.61
PGSC0003DMT400049212	Potato	cytosol	41.43	41.52
PGSC0003DMT400014466	Potato	cytosol	24.5	39.15
PGSC0003DMT400039263	Potato	cytosol	30.51	28.9

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ProteinID:ABB16994	ProteinID:ABB16994.1
ProteinID:ABC01891	ProteinID:ABC01891.1	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	ncoils:Coil	EMBL:DQ228345
EMBL:DQ294259	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
UniProt:M0ZYR0	PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400004272	PGSC:PGSC0003DMG400004272	EnsemblPlants:PGSC0003DMT400010906
PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000296A5BA	SEG:seg	:	:	:	:

Description

Tubulin alpha chain [Source:PGSC_GENE;Acc:PGSC0003DMG400004272]

Coordinates

chr12:-:61101391..61103964

Molecular Weight (calculated)

49659.9 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.166

Length

449 amino acids

Sequence
(BLAST)

001: MREIISVHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT SPGAAHDAFN TFFSETGAGK HVPRAIFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: VVMLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVPE ITNAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGV DDEEDGDEY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.