Factsheet for VIT_06s0004g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	97.55	97.33
PGSC0003DMT400010906	Potato	cytosol	97.33	97.33
TraesCS2D01G202200.1	Wheat	cytosol	97.33	97.11
TraesCS2B01G221800.1	Wheat	cytosol	97.33	97.11
TraesCS2A01G185500.2	Wheat	cytosol	97.33	97.11
Os07t0574800-02	Rice	plasma membrane	97.33	97.11
Zm00001d021891_P001	Maize	cytosol	96.88	96.67
KXG36544	Sorghum	cytosol	96.88	96.67
CDY35856	Canola	cytosol	32.07	96.64
Zm00001d006651_P005	Maize	plasma membrane	96.44	96.22
VIT_00s0373g00010.t01	Wine grape	cytosol	67.26	93.79
VIT_03s0088g00380.t01	Wine grape	cytosol	93.54	93.33
VIT_14s0108g00440.t01	Wine grape	cytosol	92.87	92.67
VIT_18s0001g08250.t01	Wine grape	cytosol	92.65	92.24
VIT_00s1322g00010.t01	Wine grape	cytosol	56.35	92.0
HORVU2Hr1G037550.2	Barley	cytosol	91.09	90.49
VIT_08s0007g07260.t01	Wine grape	cytosol	89.75	90.36
HORVU2Hr1G037570.3	Barley	cytosol	85.75	86.71
VIT_06s0009g02020.t01	Wine grape	cytosol	42.54	42.83
VIT_08s0040g00980.t01	Wine grape	cytosol	42.54	42.73
VIT_06s0004g05870.t01	Wine grape	cytosol	42.32	42.6
VIT_10s0003g05320.t01	Wine grape	cytosol	42.09	42.47
VIT_17s0000g02450.t01	Wine grape	cytosol	42.09	42.47
VIT_08s0007g01630.t01	Wine grape	cytosol	42.09	42.28
VIT_02s0025g03680.t01	Wine grape	cytosol	42.09	42.28
VIT_16s0050g00380.t01	Wine grape	cytosol	41.43	41.43
VIT_02s0025g03540.t01	Wine grape	cytosol	40.76	41.22
VIT_18s0001g14360.t01	Wine grape	cytosol	40.98	41.07
VIT_15s0046g01350.t01	Wine grape	cytosol	29.4	27.85

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100260286	wikigene:100260286	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	ProteinID:CCB43808	ProteinID:CCB43808.1	ncoils:Coil	UniProt:F6GUN1
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100260286
wikigene:LOC100260286	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	TIGR:TC55789	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015C7F00	ArrayExpress:VIT_06s0004g00480
EnsemblPlantsGene:VIT_06s0004g00480	EnsemblPlants:VIT_06s0004g00480.t01	unigene:Vvi.6884	RefSeq:XP_002285721	RefSeq:XP_002285721.1	SEG:seg

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:F6GUN1]

Coordinates

chr6:+:667671..671247

Molecular Weight (calculated)

49672.0 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.148

Length

449 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVGHDAFN TFFSETGAGK HVPRAIFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVPE ITNAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGV DDDEEAEDY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.