Factsheet for VIT_03s0088g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0373g00010.t01	Wine grape	cytosol	71.33	99.69
VIT_00s1322g00010.t01	Wine grape	cytosol	60.44	98.91
VIT_14s0108g00440.t01	Wine grape	cytosol	98.67	98.67
VIT_18s0001g08250.t01	Wine grape	cytosol	98.67	98.45
GSMUA_Achr7P17960_001	Banana	cytosol	85.56	96.98
VIT_06s0004g00480.t01	Wine grape	cytosol	93.33	93.54
VIT_08s0007g07260.t01	Wine grape	cytosol	85.56	86.32
VIT_06s0004g05870.t01	Wine grape	cytosol	42.89	43.27
VIT_17s0000g02450.t01	Wine grape	cytosol	42.67	43.15
VIT_06s0009g02020.t01	Wine grape	cytosol	42.67	43.05
VIT_08s0007g01630.t01	Wine grape	cytosol	42.67	42.95
VIT_08s0040g00980.t01	Wine grape	cytosol	42.67	42.95
VIT_02s0025g03680.t01	Wine grape	cytosol	42.67	42.95
VIT_10s0003g05320.t01	Wine grape	cytosol	42.44	42.92
VIT_18s0001g14360.t01	Wine grape	cytosol	41.78	41.96
VIT_02s0025g03540.t01	Wine grape	cytosol	41.33	41.89
VIT_16s0050g00380.t01	Wine grape	cytosol	41.78	41.87
VIT_15s0046g01350.t01	Wine grape	cytosol	30.44	28.9

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100256600	wikigene:100256600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
EMBL:AM424894	InterPro:Alpha_tubulin	ProteinID:CAN62392	ProteinID:CAN62392.1	ProteinID:CCB49635	ProteinID:CCB49635.1
ncoils:Coil	UniProt:F6HBQ3	EMBL:FN595512	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100256600	wikigene:LOC100256600	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC63601	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI00015CC19E	ArrayExpress:VIT_03s0088g00380	EnsemblPlantsGene:VIT_03s0088g00380	EnsemblPlants:VIT_03s0088g00380.t01	unigene:Vvi.24347	unigene:Vvi.7613
RefSeq:XP_002275973	RefSeq:XP_002275973.1	SEG:seg	:	:	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:F6HBQ3]

Coordinates

chr3:+:8412010..8414515

Molecular Weight (calculated)

49557.5 Da

IEP (calculated)

4.682

GRAVY (calculated)

-0.208

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TPGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAESA EGDDDEGDEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.