Factsheet for VIT_17s0000g02450.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g02020.t01	Wine grape	cytosol	95.73	95.52
Os01t0282800-02	Rice	plasma membrane	95.73	95.3
Os01t0805900-01	Rice	plasma membrane	95.73	95.3
TraesCS3B01G363500.1	Wheat	golgi, unclear	95.51	95.08
KXG32297	Sorghum	cytosol	95.28	95.07
VIT_08s0040g00980.t01	Wine grape	cytosol	95.06	94.63
PGSC0003DMT400014466	Potato	cytosol	59.55	94.31
TraesCS3A01G333300.1	Wheat	cytosol	95.51	94.23
GSMUA_Achr3P18460_001	Banana	cytosol	81.57	94.04
VIT_02s0025g03680.t01	Wine grape	cytosol	94.38	93.96
VIT_10s0003g05320.t01	Wine grape	cytosol	93.71	93.71
Solyc03g118760.2.1	Tomato	nucleus	93.03	93.45
VIT_08s0007g01630.t01	Wine grape	cytosol	93.71	93.29
VIT_16s0050g00380.t01	Wine grape	cytosol	93.48	92.65
VIT_06s0004g05870.t01	Wine grape	cytosol	92.81	92.6
KRH41834	Soybean	cytosol	92.58	92.58
VIT_18s0001g14360.t01	Wine grape	cytosol	93.03	92.41
KRH60536	Soybean	endoplasmic reticulum	92.13	92.13
VIT_02s0025g03540.t01	Wine grape	cytosol	91.01	91.22
TraesCS3D01G326900.1	Wheat	plastid	95.51	85.17
HORVU3Hr1G078940.1	Barley	mitochondrion	95.51	84.49
VIT_00s0373g00010.t01	Wine grape	cytosol	32.81	45.34
VIT_14s0108g00440.t01	Wine grape	cytosol	43.37	42.89
VIT_18s0001g08250.t01	Wine grape	cytosol	43.37	42.79
VIT_03s0088g00380.t01	Wine grape	cytosol	43.15	42.67
VIT_06s0004g00480.t01	Wine grape	cytosol	42.47	42.09
VIT_08s0007g07260.t01	Wine grape	cytosol	40.45	40.36
VIT_00s1322g00010.t01	Wine grape	cytosol	24.49	39.64
VIT_15s0046g01350.t01	Wine grape	cytosol	34.61	32.49

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100259401	wikigene:100259401	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
EMBL:AM430866	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CAN64745	ProteinID:CAN64745.1	ProteinID:CCB43277
ProteinID:CCB43277.1	ncoils:Coil	UniProt:F6GSK4	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100259401	wikigene:LOC100259401	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF241	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015C984C	ArrayExpress:VIT_17s0000g02450	EnsemblPlantsGene:VIT_17s0000g02450	EnsemblPlants:VIT_17s0000g02450.t01	RefSeq:XP_002282157
RefSeq:XP_002282157.1	SEG:seg	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6GSK4]

Coordinates

chr17:-:2199755..2201831

Molecular Weight (calculated)

49781.8 Da

IEP (calculated)

4.495

GRAVY (calculated)

-0.350

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYTGNS DLQLERVNVY YNEAGGGRFV PRAVLMDLEP GTMDSIRTGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEVENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQI INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DDEGDYEDDD GDTES

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.