Factsheet for VIT_14s0108g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0373g00010.t01	Wine grape	cytosol	70.89	99.07
VIT_03s0088g00380.t01	Wine grape	cytosol	98.67	98.67
VIT_00s1322g00010.t01	Wine grape	cytosol	60.22	98.55
VIT_18s0001g08250.t01	Wine grape	cytosol	98.22	98.0
VIT_06s0004g00480.t01	Wine grape	cytosol	92.67	92.87
VIT_08s0007g07260.t01	Wine grape	cytosol	84.89	85.65
VIT_06s0004g05870.t01	Wine grape	cytosol	43.56	43.95
VIT_10s0003g05320.t01	Wine grape	cytosol	43.11	43.6
VIT_17s0000g02450.t01	Wine grape	cytosol	42.89	43.37
VIT_06s0009g02020.t01	Wine grape	cytosol	42.89	43.27
VIT_08s0007g01630.t01	Wine grape	cytosol	42.89	43.18
VIT_08s0040g00980.t01	Wine grape	cytosol	42.89	43.18
VIT_02s0025g03680.t01	Wine grape	cytosol	42.89	43.18
VIT_02s0025g03540.t01	Wine grape	cytosol	42.0	42.57
VIT_18s0001g14360.t01	Wine grape	cytosol	42.22	42.41
VIT_16s0050g00380.t01	Wine grape	cytosol	42.22	42.32
VIT_15s0046g01350.t01	Wine grape	cytosol	30.89	29.32

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100247366	wikigene:100247366	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
InterPro:Alpha_tubulin	ProteinID:CCB47535	ProteinID:CCB47535.1	ncoils:Coil	UniProt:F6H5R4	EMBL:FN595239
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100247366
wikigene:LOC100247366	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227
PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015C9DA2	ArrayExpress:VIT_14s0108g00440	EnsemblPlantsGene:VIT_14s0108g00440	EnsemblPlants:VIT_14s0108g00440.t01
unigene:Vvi.14249	RefSeq:XP_002283198	RefSeq:XP_002283198.1	SEG:seg	:	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:F6H5R4]

Coordinates

chr14:+:29211231..29212889

Molecular Weight (calculated)

49624.7 Da

IEP (calculated)

4.735

GRAVY (calculated)

-0.195

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFLDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFHA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAESA EGEEDEGDEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.